Lipostar, a Comprehensive Platform-Neutral Cheminformatics Tool for Lipidomics

被引:86
作者
Goracci, Laura [1 ]
Tortorella, Sara [1 ]
Tiberi, Paolo [2 ]
Pellegrino, Roberto Maria [1 ]
Di Veroli, Alessandra [1 ]
Valeri, Aurora [1 ]
Cruciani, Gabriele [1 ]
机构
[1] Univ Perugia, Dept Chem Biol & Biotechnol, Via Elce Sotto 8, I-06123 Perugia, Italy
[2] Mol Discovery Ltd, Centennial Pk, Borehamwood, Herts, England
关键词
MASS-SPECTROMETRY; ELECTROSPRAY-IONIZATION; LIVER-INJURY; TROGLITAZONE HEPATOTOXICITY; MULTIVARIATE-ANALYSIS; IDENTIFICATION; METABOLISM; LIPIDS; SPECTRA; DISEASE;
D O I
10.1021/acs.analchem.7b01259
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
To date, the main limitations for LC-MS-based untargeted lipidomics reside in the lack of. adequate computational and cheminformatics tools that are able to support the analysis of several thousands of species from biological samples, enabling data mining and automating lipid identification and external prediction processes. To address these issues, we developed Lipostar, novel vendor-neutral high-throughput software that effectively supports both targeted and untargeted LC-MS lipidomics, implementing data acquisition, user-friendly multivariate analysis (to be used for model,generation and new sample predictions), and advanced lipid identification protocols that can work with or without the support of preformed lipid databases. Moreover; Lipostar integrates the lipidomic processes With a full metabolite identification (MetID) procedure, essential in drug safety applications and in translational studies. Case studies demonstrating a. number of Lipostar features are also presented.
引用
收藏
页码:6258 / 6265
页数:8
相关论文
共 62 条
[1]   Lipid-Pro: a computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms [J].
Ahmed, Zeeshan ;
Mayr, Michel ;
Zeeshan, Saman ;
Dandekar, Thomas ;
Mueller, Martin J. ;
Fekete, Agnes .
BIOINFORMATICS, 2015, 31 (07) :1150-1153
[2]   Partial least squares for discrimination [J].
Barker, M ;
Rayens, W .
JOURNAL OF CHEMOMETRICS, 2003, 17 (03) :166-173
[3]   Drug-induced toxicity on mitochondria and lipid metabolism: Mechanistic diversity and deleterious consequences for the liver [J].
Begriche, Karima ;
Massart, Julie ;
Robin, Marie-Anne ;
Borgne-Sanchez, Annie ;
Fromenty, Bernard .
JOURNAL OF HEPATOLOGY, 2011, 54 (04) :773-794
[4]   Characterization of primary human hepatocyte spheroids as a model system for drug-induced liver injury, liver function and disease [J].
Bell, Catherine C. ;
Hendriks, Delilah F. G. ;
Moro, Sabrina M. L. ;
Ellis, Ewa ;
Walsh, Joanne ;
Renblom, Anna ;
Puigvert, Lisa Fredriksson ;
Dankers, Anita C. A. ;
Jacobs, Frank ;
Snoeys, Jan ;
Sison-Young, Rowena L. ;
Jenkins, Rosalind E. ;
Nordling, Asa ;
Mkrtchian, Souren ;
Park, B. Kevin ;
Kitteringham, Neil R. ;
Goldring, Christopher E. P. ;
Lauschke, Volker M. ;
Ingelman-Sundberg, Magnus .
SCIENTIFIC REPORTS, 2016, 6
[5]   Separation of Cis-Trans Phospholipid Isomers Using Reversed Phase LC with High Resolution MS Detection [J].
Bird, Susan S. ;
Marur, Vasant R. ;
Stavrovskaya, Irina G. ;
Kristal, Bruce S. .
ANALYTICAL CHEMISTRY, 2012, 84 (13) :5509-5517
[6]   Enhanced metabolite identification with MSE and a semiautomated software for structural elucidation [J].
Bonn, Britta ;
Leandersson, Carina ;
Fontaine, Fabien ;
Zamora, Ismael .
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2010, 24 (21) :3127-3138
[7]   Lipid mapping of colonic mucosa by cluster TOF-SIMS imaging and multivariate analysis in cftr knockout mice [J].
Brulet, Marc ;
Seyer, Alexandre ;
Edelman, Aleksander ;
Brunelle, Alain ;
Fritsch, Janine ;
Ollero, Mario ;
Laprevote, Olivier .
JOURNAL OF LIPID RESEARCH, 2010, 51 (10) :3034-3045
[8]   Identification of novel candidate plasma metabolite biomarkers for distinguishing serous ovarian carcinoma and benign serous ovarian tumors [J].
Buas, Matthew F. ;
Gu, Haiwei ;
Djukovic, Danijel ;
Zhu, Jiangjiang ;
Drescher, Charles W. ;
Urban, Nicole ;
Raftery, Daniel ;
Li, Christopher I. .
GYNECOLOGIC ONCOLOGY, 2016, 140 (01) :138-144
[9]   Toward Merging Untargeted and Targeted Methods in Mass Spectrometry-Based Metabolomics and Lipidomics [J].
Cajka, Tomas ;
Fiehn, Oliver .
ANALYTICAL CHEMISTRY, 2016, 88 (01) :524-545
[10]   Use of lipidomics to investigate sebum dysfunction in juvenile acne [J].
Camera, Emanuela ;
Ludovici, Matteo ;
Tortorella, Sara ;
Sinagra, Jo-Linda ;
Capitanio, Bruno ;
Goracci, Laura ;
Picardo, Mauro .
JOURNAL OF LIPID RESEARCH, 2016, 57 (06) :1051-1058