Deciphering ocean carbon in a changing world

被引:227
作者
Moran, Mary Ann [1 ]
Kujawinski, Elizabeth B. [2 ]
Stubbins, Aron [3 ]
Fatland, Rob [4 ]
Aluwihare, Lihini I. [5 ]
Buchan, Alison [6 ]
Crump, Byron C. [7 ]
Dorrestein, Pieter C. [8 ,9 ,10 ]
Dyhrman, Sonya T. [11 ,12 ]
Hess, Nancy J. [13 ]
Howe, Bill [14 ]
Longnecker, Krista [2 ]
Medeiros, Patricia M. [1 ]
Niggemann, Jutta [15 ]
Obernosterer, Ingrid [16 ]
Repeta, Daniel J. [2 ]
Waldbauer, Jacob R. [17 ]
机构
[1] Univ Georgia, Dept Marine Sci, Athens, GA 30602 USA
[2] Woods Hole Oceanog Inst, Dept Marine Chem & Geochem, Woods Hole, MA 02543 USA
[3] Univ Georgia, Dept Marine Sci, Skidaway Inst Oceanog, Savannah, GA 31411 USA
[4] Univ Washington, Dept Informat Technol, Seattle, WA 98105 USA
[5] Univ Calif San Diego, Scripps Inst Oceanog, Geosci Res Div, La Jolla, CA 92093 USA
[6] Univ Tennessee, Dept Microbiol, Knoxville, TN 37996 USA
[7] Oregon State Univ, Coll Earth Ocean & Atmospher Sci, Corvallis, OR 97331 USA
[8] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, Dept Pharmacol, La Jolla, CA 92037 USA
[9] Univ Calif San Diego, Dept Chem, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92037 USA
[10] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, Dept Biochem, La Jolla, CA 92037 USA
[11] Columbia Univ, Dept Earth & Environm Sci, Palisades, NY 10964 USA
[12] Columbia Univ, Lamont Doherty Earth Observ, Palisades, NY 10964 USA
[13] Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA
[14] Univ Washington, Dept Comp Sci & Engn, Seattle, WA 98195 USA
[15] Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm, Res Grp Marine Geochem, D-26129 Oldenburg, Germany
[16] Univ Paris 06, Sorbonne Univ, CNRS, Observ Oceanol,Lab Oceanog Microbienne, F-66650 Banyuls Sur Mer, France
[17] Univ Chicago, Dept Geophys Sci, 5734 S Ellis Ave, Chicago, IL 60637 USA
基金
美国国家科学基金会;
关键词
dissolved organic matter; marine microbes; cyberinfrastructure; DISSOLVED ORGANIC-MATTER; MASS-SPECTROMETRY; LIQUID-CHROMATOGRAPHY; MOLECULAR NETWORKING; MICROBIAL-PRODUCTION; COMMUNITY STRUCTURE; MARINE-BACTERIA; VIRAL LYSIS; AMINO-ACIDS; MAJOR ROLE;
D O I
10.1073/pnas.1514645113
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon on Earth, comparable in size to the atmospheric CO2 reservoir. A vast number of compounds are present in DOM, and they play important roles in all major element cycles, contribute to the storage of atmospheric CO2 in the ocean, support marine ecosystems, and facilitate interactions between organisms. At the heart of the DOM cycle lie molecular-level relationships between the individual compounds in DOM and the members of the ocean microbiome that produce and consume them. In the past, these connections have eluded clear definition because of the sheer numerical complexity of both DOM molecules and microorganisms. Emerging tools in analytical chemistry, microbiology, and informatics are breaking down the barriers to a fuller appreciation of these connections. Here we highlight questions being addressed using recent methodological and technological developments in those fields and consider how these advances are transforming our understanding of some of the most important reactions of the marine carbon cycle.
引用
收藏
页码:3143 / 3151
页数:9
相关论文
共 150 条
[41]   Cryptic carbon and sulfur cycling between surface ocean plankton [J].
Durham, Bryndan P. ;
Sharma, Shalabh ;
Luo, Haiwei ;
Smith, Christa B. ;
Amin, Shady A. ;
Bender, Sara J. ;
Dearth, Stephen P. ;
Van Mooy, Benjamin A. S. ;
Campagna, Shawn R. ;
Kujawinski, Elizabeth B. ;
Armbrust, E. Virginia ;
Moran, Mary Ann .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (02) :453-457
[42]   The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response [J].
Dyhrman, Sonya T. ;
Jenkins, Bethany D. ;
Rynearson, Tatiana A. ;
Saito, Mak A. ;
Mercier, Melissa L. ;
Alexander, Harriet ;
Whitney, LeAnn P. ;
Drzewianowski, Andrea ;
Bulygin, Vladimir V. ;
Bertrand, Erin M. ;
Wu, Zhijin ;
Benitez-Nelson, Claudia ;
Heithoff, Abigail .
PLOS ONE, 2012, 7 (03)
[43]   A microbial source of phosphonates in oligotrophic marine systems [J].
Dyhrman, Sonya T. ;
Benitez-Nelson, Claudia R. ;
Orchard, Elizabeth D. ;
Haley, Sheean T. ;
Pellechia, Perry J. .
NATURE GEOSCIENCE, 2009, 2 (10) :696-699
[44]   Stimulated Bacterial Growth under Elevated pCO2: Results from an Off-Shore Mesocosm Study [J].
Endres, Sonja ;
Galgani, Luisa ;
Riebesell, Ulf ;
Schulz, Kai-Georg ;
Engel, Anja .
PLOS ONE, 2014, 9 (06)
[45]   Impact of CO2 enrichment on organic matter dynamics during nutrient induced coastal phytoplankton blooms [J].
Engel, Anja ;
Piontek, Judith ;
Grossart, Hans-Peter ;
Riebesell, Ulf ;
Schulz, Kai G. ;
Sperling, Martin .
JOURNAL OF PLANKTON RESEARCH, 2014, 36 (03) :641-657
[46]   Potential for phosphite and phosphonate utilization by Prochlorococcus [J].
Feingersch, Roi ;
Philosof, Alon ;
Mejuch, Tom ;
Glaser, Fabian ;
Alalouf, Onit ;
Shoham, Yuval ;
Beja, Oded .
ISME JOURNAL, 2012, 6 (04) :827-834
[47]   UTILIZATION OF AMINO-ACIDS BY PLANKTONIC MARINE-BACTERIA - IMPORTANCE OF CLEAN TECHNIQUE AND LOW SUBSTRATE ADDITIONS [J].
FERGUSON, RL ;
SUNDA, WG .
LIMNOLOGY AND OCEANOGRAPHY, 1984, 29 (02) :258-274
[48]   Prokaryotic functional gene diversity in the sunlit ocean: Stumbling in the dark [J].
Ferrera, Isabel ;
Sebastian, Marta ;
Acinas, Silvia G. ;
Gasol, Josep M. .
CURRENT OPINION IN MICROBIOLOGY, 2015, 25 :33-39
[49]   Release of ecologically relevant metabolites by the cyanobacterium Synechococcus elongatusCCMP 1631 [J].
Fiore, Cara L. ;
Longnecker, Krista ;
Soule, Melissa C. Kido ;
Kujawinski, Elizabeth B. .
ENVIRONMENTAL MICROBIOLOGY, 2015, 17 (10) :3949-3963
[50]   Hidden cycle of dissolved organic carbon in the deep ocean [J].
Follett, Christopher L. ;
Repeta, Daniel J. ;
Rothman, Daniel H. ;
Xu, Li ;
Santinelli, Chiara .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (47) :16706-16711