Deciphering ocean carbon in a changing world

被引:218
作者
Moran, Mary Ann [1 ]
Kujawinski, Elizabeth B. [2 ]
Stubbins, Aron [3 ]
Fatland, Rob [4 ]
Aluwihare, Lihini I. [5 ]
Buchan, Alison [6 ]
Crump, Byron C. [7 ]
Dorrestein, Pieter C. [8 ,9 ,10 ]
Dyhrman, Sonya T. [11 ,12 ]
Hess, Nancy J. [13 ]
Howe, Bill [14 ]
Longnecker, Krista [2 ]
Medeiros, Patricia M. [1 ]
Niggemann, Jutta [15 ]
Obernosterer, Ingrid [16 ]
Repeta, Daniel J. [2 ]
Waldbauer, Jacob R. [17 ]
机构
[1] Univ Georgia, Dept Marine Sci, Athens, GA 30602 USA
[2] Woods Hole Oceanog Inst, Dept Marine Chem & Geochem, Woods Hole, MA 02543 USA
[3] Univ Georgia, Dept Marine Sci, Skidaway Inst Oceanog, Savannah, GA 31411 USA
[4] Univ Washington, Dept Informat Technol, Seattle, WA 98105 USA
[5] Univ Calif San Diego, Scripps Inst Oceanog, Geosci Res Div, La Jolla, CA 92093 USA
[6] Univ Tennessee, Dept Microbiol, Knoxville, TN 37996 USA
[7] Oregon State Univ, Coll Earth Ocean & Atmospher Sci, Corvallis, OR 97331 USA
[8] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, Dept Pharmacol, La Jolla, CA 92037 USA
[9] Univ Calif San Diego, Dept Chem, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92037 USA
[10] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, Dept Biochem, La Jolla, CA 92037 USA
[11] Columbia Univ, Dept Earth & Environm Sci, Palisades, NY 10964 USA
[12] Columbia Univ, Lamont Doherty Earth Observ, Palisades, NY 10964 USA
[13] Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA
[14] Univ Washington, Dept Comp Sci & Engn, Seattle, WA 98195 USA
[15] Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm, Res Grp Marine Geochem, D-26129 Oldenburg, Germany
[16] Univ Paris 06, Sorbonne Univ, CNRS, Observ Oceanol,Lab Oceanog Microbienne, F-66650 Banyuls Sur Mer, France
[17] Univ Chicago, Dept Geophys Sci, 5734 S Ellis Ave, Chicago, IL 60637 USA
基金
美国国家科学基金会;
关键词
dissolved organic matter; marine microbes; cyberinfrastructure; DISSOLVED ORGANIC-MATTER; MASS-SPECTROMETRY; LIQUID-CHROMATOGRAPHY; MOLECULAR NETWORKING; MICROBIAL-PRODUCTION; COMMUNITY STRUCTURE; MARINE-BACTERIA; VIRAL LYSIS; AMINO-ACIDS; MAJOR ROLE;
D O I
10.1073/pnas.1514645113
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon on Earth, comparable in size to the atmospheric CO2 reservoir. A vast number of compounds are present in DOM, and they play important roles in all major element cycles, contribute to the storage of atmospheric CO2 in the ocean, support marine ecosystems, and facilitate interactions between organisms. At the heart of the DOM cycle lie molecular-level relationships between the individual compounds in DOM and the members of the ocean microbiome that produce and consume them. In the past, these connections have eluded clear definition because of the sheer numerical complexity of both DOM molecules and microorganisms. Emerging tools in analytical chemistry, microbiology, and informatics are breaking down the barriers to a fuller appreciation of these connections. Here we highlight questions being addressed using recent methodological and technological developments in those fields and consider how these advances are transforming our understanding of some of the most important reactions of the marine carbon cycle.
引用
收藏
页码:3143 / 3151
页数:9
相关论文
共 150 条
  • [41] Cryptic carbon and sulfur cycling between surface ocean plankton
    Durham, Bryndan P.
    Sharma, Shalabh
    Luo, Haiwei
    Smith, Christa B.
    Amin, Shady A.
    Bender, Sara J.
    Dearth, Stephen P.
    Van Mooy, Benjamin A. S.
    Campagna, Shawn R.
    Kujawinski, Elizabeth B.
    Armbrust, E. Virginia
    Moran, Mary Ann
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (02) : 453 - 457
  • [42] The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response
    Dyhrman, Sonya T.
    Jenkins, Bethany D.
    Rynearson, Tatiana A.
    Saito, Mak A.
    Mercier, Melissa L.
    Alexander, Harriet
    Whitney, LeAnn P.
    Drzewianowski, Andrea
    Bulygin, Vladimir V.
    Bertrand, Erin M.
    Wu, Zhijin
    Benitez-Nelson, Claudia
    Heithoff, Abigail
    [J]. PLOS ONE, 2012, 7 (03):
  • [43] A microbial source of phosphonates in oligotrophic marine systems
    Dyhrman, Sonya T.
    Benitez-Nelson, Claudia R.
    Orchard, Elizabeth D.
    Haley, Sheean T.
    Pellechia, Perry J.
    [J]. NATURE GEOSCIENCE, 2009, 2 (10) : 696 - 699
  • [44] Stimulated Bacterial Growth under Elevated pCO2: Results from an Off-Shore Mesocosm Study
    Endres, Sonja
    Galgani, Luisa
    Riebesell, Ulf
    Schulz, Kai-Georg
    Engel, Anja
    [J]. PLOS ONE, 2014, 9 (06):
  • [45] Impact of CO2 enrichment on organic matter dynamics during nutrient induced coastal phytoplankton blooms
    Engel, Anja
    Piontek, Judith
    Grossart, Hans-Peter
    Riebesell, Ulf
    Schulz, Kai G.
    Sperling, Martin
    [J]. JOURNAL OF PLANKTON RESEARCH, 2014, 36 (03) : 641 - 657
  • [46] Potential for phosphite and phosphonate utilization by Prochlorococcus
    Feingersch, Roi
    Philosof, Alon
    Mejuch, Tom
    Glaser, Fabian
    Alalouf, Onit
    Shoham, Yuval
    Beja, Oded
    [J]. ISME JOURNAL, 2012, 6 (04) : 827 - 834
  • [47] UTILIZATION OF AMINO-ACIDS BY PLANKTONIC MARINE-BACTERIA - IMPORTANCE OF CLEAN TECHNIQUE AND LOW SUBSTRATE ADDITIONS
    FERGUSON, RL
    SUNDA, WG
    [J]. LIMNOLOGY AND OCEANOGRAPHY, 1984, 29 (02) : 258 - 274
  • [48] Prokaryotic functional gene diversity in the sunlit ocean: Stumbling in the dark
    Ferrera, Isabel
    Sebastian, Marta
    Acinas, Silvia G.
    Gasol, Josep M.
    [J]. CURRENT OPINION IN MICROBIOLOGY, 2015, 25 : 33 - 39
  • [49] Release of ecologically relevant metabolites by the cyanobacterium Synechococcus elongatusCCMP 1631
    Fiore, Cara L.
    Longnecker, Krista
    Soule, Melissa C. Kido
    Kujawinski, Elizabeth B.
    [J]. ENVIRONMENTAL MICROBIOLOGY, 2015, 17 (10) : 3949 - 3963
  • [50] Hidden cycle of dissolved organic carbon in the deep ocean
    Follett, Christopher L.
    Repeta, Daniel J.
    Rothman, Daniel H.
    Xu, Li
    Santinelli, Chiara
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (47) : 16706 - 16711