Multiple processor version of a Monte Carlo code for photon transport in turbid media

被引:25
作者
Colasanti, A
Guida, G
Kisslinger, A
Liuzzi, R
Quarto, M
Riccio, P
Roberti, G
Villani, F
机构
[1] Univ Naples Federico II, Dipartimento Sci Fis, Naples, Italy
[2] Univ Naples Federico II, Dipartimento Biol & Patol Cellulare & Mol L Calif, I-80131 Naples, Italy
[3] Ist Nazl Fis Mat, I-80125 Naples, Italy
[4] CNR, Ctr Endocrinol & Oncol Sperimentale, I-80131 Naples, Italy
关键词
Monte Carlo codes; scattering media; photon transport; intralipid; parallel computing; optical parameters; transillumination;
D O I
10.1016/S0010-4655(00)00138-7
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Although Monte Carlo (MC) simulations represent an accurate and flexible tool to study the photon transport in strongly scattering media with complex geometrical topologies, they are very often infeasible because of their very high computation Limes. Parallel computing, in principle very suitable fur MC approach because it consists in the repeated application of the same calculations to unrelated and superposing events, offers a possible approach to overcome this problem. It was developed an MC multiple processor code for optical and IR photon transport which was run on the parallel processor computer CRAY-T3E (128 DEC Alpha EV5 nodes, 600 Mflops) at CINCA (Bologna, Italy). The comparison between single processor and multiple processor runs for the same tissue models shows that the parallelization reduces the computation time by a factor of about N, where N is the number of used processors. This means a computation time reduction by a factor ranging from about 10(2) (as in our case where 128 processors are available) up to about 10(3) (with the most powerful parallel computers with 1024 processors). This reduction could make feasible MC simulations till now impracticable. The scaling of the execution time of the parallel code, as a function of the values of the main input parameters, is also evaluated. (C) 2000 Published by Elsevier Science B.V.
引用
收藏
页码:84 / 93
页数:10
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