Examining the impact of gene variants on histone lysine methylation

被引:23
作者
Van Rechem, Capucine
Whetstine, Johnathan R.
机构
[1] Massachusetts Gen Hosp, Ctr Canc, Charlestown, MA 02129 USA
[2] Harvard Univ, Sch Med, Dept Med, Charlestown, MA 02129 USA
来源
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS | 2014年 / 1839卷 / 12期
关键词
Somatic mutation; SNP; KMT; KDM; EZH2; Histone; SINGLE-NUCLEOTIDE POLYMORPHISMS; CHROMATIN REMODELING GENES; LINKED MENTAL-RETARDATION; ZINC-FINGER GENE; SOMATIC MUTATIONS; SOTOS-SYNDROME; NSD1; MUTATIONS; MICROSATELLITE INSTABILITY; COLORECTAL-CANCER; COMPASS FAMILY;
D O I
10.1016/j.bbagrm.2014.05.014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In recent years, there has been a boom in the amount of genome-wide sequencing data that has uncovered important and unappreciated links between certain genes, families of genes and enzymatic processes and diseases such as cancer. Such studies have highlighted the impact that chromatin modifying enzymes could have in cancer and other genetic diseases. In this review, we summarize characterized mutations and single nucleotide polymorphisms (SNPs) in histone lysine methyltransferases (KMTs), histone lysine demethylases (KDMs) and histones. We primarily focus on variants with strong disease correlations and discuss how they could impact histone lysine methylation dynamics and gene regulation. This article is part of a Special Issue entitled: Methylation: A Multifaceted Modification looking at transcription and beyond. (C) 2014 Elsevier B.V. All rights reserved.
引用
收藏
页码:1463 / 1476
页数:14
相关论文
共 138 条
[51]   Mutational spectrum analysis of chronic myelomonocytic leukemia includes genes associated with epigenetic regulation: UTX, EZH2, and DNMT3A [J].
Jankowska, Anna M. ;
Makishima, Hideki ;
Tiu, Ramon V. ;
Szpurka, Hadrian ;
Huang, Yun ;
Traina, Fabiola ;
Visconte, Valeria ;
Sugimoto, Yuka ;
Prince, Courtney ;
O'Keefe, Christine ;
Hsi, Eric D. ;
List, Alan ;
Sekeres, Mikkael A. ;
Rao, Anjana ;
McDevitt, Michael A. ;
Maciejewski, Jaroslaw P. .
BLOOD, 2011, 118 (14) :3932-3941
[52]   Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation [J].
Jensen, LR ;
Amende, M ;
Gurok, U ;
Moser, B ;
Gimmel, V ;
Tzschach, A ;
Janecke, AR ;
Tariverdian, G ;
Chelly, J ;
Fryns, JP ;
Van Esch, H ;
Kleefstra, T ;
Hamel, B ;
Moraine, C ;
Gécz, J ;
Turner, G ;
Reinhardt, R ;
Kalscheuer, VM ;
Ropers, HH ;
Lenzner, S .
AMERICAN JOURNAL OF HUMAN GENETICS, 2005, 76 (02) :227-236
[53]   Dissecting the genomic complexity underlying medulloblastoma [J].
Jones, David T. W. ;
Jaeger, Natalie ;
Kool, Marcel ;
Zichner, Thomas ;
Hutter, Barbara ;
Sultan, Marc ;
Cho, Yoon-Jae ;
Pugh, Trevor J. ;
Hovestadt, Volker ;
Stuetz, Adrian M. ;
Rausch, Tobias ;
Warnatz, Hans-Joerg ;
Ryzhova, Marina ;
Bender, Sebastian ;
Sturm, Dominik ;
Pleier, Sabrina ;
Cin, Huriye ;
Pfaff, Elke ;
Sieber, Laura ;
Wittmann, Andrea ;
Remke, Marc ;
Witt, Hendrik ;
Hutter, Sonja ;
Tzaridis, Theophilos ;
Weischenfeldt, Joachim ;
Raeder, Benjamin ;
Avci, Meryem ;
Amstislavskiy, Vyacheslav ;
Zapatka, Marc ;
Weber, Ursula D. ;
Wang, Qi ;
Lasitschka, Baerbel ;
Bartholomae, Cynthia C. ;
Schmidt, Manfred ;
von Kalle, Christof ;
Ast, Volker ;
Lawerenz, Chris ;
Eils, Juergen ;
Kabbe, Rolf ;
Benes, Vladimir ;
van Sluis, Peter ;
Koster, Jan ;
Volckmann, Richard ;
Shih, David ;
Betts, Matthew J. ;
Russell, Robert B. ;
Coco, Simona ;
Tonini, Gian Paolo ;
Schueller, Ulrich ;
Hans, Volkmar .
NATURE, 2012, 488 (7409) :100-105
[54]   Core signaling pathways in human pancreatic cancers revealed by global genomic analyses [J].
Jones, Sian ;
Zhang, Xiaosong ;
Parsons, D. Williams ;
Lin, Jimmy Cheng-Ho ;
Leary, Rebecca J. ;
Angenendt, Philipp ;
Mankoo, Parminder ;
Carter, Hannah ;
Kamiyama, Hirohiko ;
Jimeno, Antonio ;
Hong, Seung-Mo ;
Fu, Baojin ;
Lin, Ming-Tseh ;
Calhoun, Eric S. ;
Kamiyama, Mihoko ;
Walter, Kimberly ;
Nikolskaya, Tatiana ;
Nikolsky, Yuri ;
Hartigan, James ;
Smith, Douglas R. ;
Hidalgo, Manuel ;
Leach, Steven D. ;
Klein, Alison P. ;
Jaffee, Elizabeth M. ;
Goggins, Michael ;
Maitra, Anirban ;
Iacobuzio-Donahue, Christine ;
Eshleman, James R. ;
Kern, Scott E. ;
Hruban, Ralph H. ;
Karchin, Rachel ;
Papadopoulos, Nickolas ;
Parmigiani, Giovanni ;
Vogelstein, Bert ;
Velculescu, Victor E. ;
Kinzler, Kenneth W. .
SCIENCE, 2008, 321 (5897) :1801-1806
[55]   Identification of eight novel NSD1 mutations in Sotos syndrome -: art. no. 126 [J].
Kamimura, J ;
Endo, Y ;
Kurotaki, N ;
Kinoshita, A ;
Miyake, N ;
Shimokawa, O ;
Harada, N ;
Visser, R ;
Ohashi, H ;
Miyakawa, K ;
Gerritsen, J ;
Innes, AM ;
Lagace, L ;
Frydman, M ;
Okamoto, N ;
Puttinger, R ;
Raskin, S ;
Resic, B ;
Culic, V ;
Yoshiura, K ;
Ohta, T ;
Kishino, T ;
Ishikawa, M ;
Niikawa, N ;
Matsumoto, N .
JOURNAL OF MEDICAL GENETICS, 2003, 40 (11) :e126
[56]   Mutational landscape and significance across 12 major cancer types [J].
Kandoth, Cyriac ;
McLellan, Michael D. ;
Vandin, Fabio ;
Ye, Kai ;
Niu, Beifang ;
Lu, Charles ;
Xie, Mingchao ;
Zhang, Qunyuan ;
McMichael, Joshua F. ;
Wyczalkowski, Matthew A. ;
Leiserson, Mark D. M. ;
Miller, Christopher A. ;
Welch, John S. ;
Walter, Matthew J. ;
Wendl, Michael C. ;
Ley, Timothy J. ;
Wilson, Richard K. ;
Raphael, Benjamin J. ;
Ding, Li .
NATURE, 2013, 502 (7471) :333-+
[57]   Short RNAs Are Transcribed from Repressed Polycomb Target Genes and Interact with Polycomb Repressive Complex-2 [J].
Kanhere, Aditi ;
Viiri, Keijo ;
Araujo, Carla C. ;
Rasaiyaah, Jane ;
Bouwman, Russell D. ;
Whyte, Warren A. ;
Pereira, C. Filipe ;
Brookes, Emily ;
Walker, Kimberly ;
Bell, George W. ;
Pombo, Ana ;
Fisher, Amanda G. ;
Young, Richard A. ;
Jenner, Richard G. .
MOLECULAR CELL, 2010, 38 (05) :675-688
[58]   A Functional Link between the Histone Demethylase PHF8 and the Transcription Factor ZNF711 in X-Linked Mental Retardation [J].
Kleine-Kohlbrecher, Daniela ;
Christensen, Jesper ;
Vandamme, Julien ;
Abarrategui, Iratxe ;
Bak, Mads ;
Tommerup, Niels ;
Shi, Xiaobing ;
Gozani, Or ;
Rappsilber, Juri ;
Salcini, Anna Elisabetta ;
Helin, Kristian .
MOLECULAR CELL, 2010, 38 (02) :165-178
[59]   Screening of mutations in the PHF8 gene and identification of a novel mutation in a Finnish family with XLMR and cleft lip/cleft palate [J].
Koivisto, A. M. ;
Ala-Mello, S. ;
Lemmela, S. ;
Komu, H. A. ;
Rautio, J. ;
Jarvela, I. .
CLINICAL GENETICS, 2007, 72 (02) :145-149
[60]   Genetic and epigenetic defects in mental retardation [J].
Kramer, Jamie M. ;
van Bokhoven, Hans .
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY, 2009, 41 (01) :96-107