KEGG Mapper for inferring cellular functions from protein sequences

被引:845
作者
Kanehisa, Minoru [1 ]
Sato, Yoko [2 ]
机构
[1] Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan
[2] Fujitsu Kyushu Syst Ltd, Social ICT Solut Dept, Hakata Ku, Fukuoka, Fukuoka, Japan
基金
日本科学技术振兴机构;
关键词
genome annotation; KEGG; KEGG Mapper; KEGG module; KEGG Orthology; pathway analysis; GENOME; GENE;
D O I
10.1002/pro.3711
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
KEGG is a reference knowledge base for biological interpretation of large-scale molecular datasets, such as genome and metagenome sequences. It accumulates experimental knowledge about high-level functions of the cell and the organism represented in terms of KEGG molecular networks, including KEGG pathway maps, BRITE hierarchies, and KEGG modules. By the process called KEGG mapping, a set of protein coding genes in the genome, for example, can be converted to KEGG molecular networks enabling interpretation of cellular functions and other high-level features. Here we report a new version of KEGG Mapper, a suite of KEGG mapping tools available at the KEGG website ( or ), together with the KOALA family tools for automatic assignment of KO (KEGG Orthology) identifiers used in the mapping.
引用
收藏
页码:28 / 35
页数:8
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