Enzyme structure with two catalytic sites for double-sieve selection of substrate

被引:314
作者
Nureki, O
Vassylyev, DG
Tateno, M
Shimada, A
Nakama, T
Fukai, S
Konno, M
Hendrickson, TL
Schimmel, P
Yokoyama, S
机构
[1] Univ Tokyo, Grad Sch Sci, Dept Biochem & Biophys, Bunkyo Ku, Tokyo 113, Japan
[2] RIKEN, Inst Phys & Chem Res, Wako, Saitama 35101, Japan
[3] Matsushita Elect Ind Co Ltd, Int Inst Adv Res, Cent Res Labs, Kyoto 61902, Japan
[4] Ochanomizu Univ, Fac Sci, Dept Chem, Bunkyo Ku, Tokyo 112, Japan
[5] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
关键词
D O I
10.1126/science.280.5363.578
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
High-fidelity transfers of genetic information in the central dogma can be achieved by a reaction called editing. The crystal structure of an enzyme with editing activity in translation is presented here at 2.5 angstroms resolution. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products. For this two-step substrate selection, a "double-sieve" mechanism has already been proposed. The present crystal structures of the synthetase in complexes with L-isoleucine and L-valine demonstrate that the first sieve is on the aminoacylation domain containing the Rossmann fold, whereas the second, editing sieve exists on a globular beta-barrel domain that protrudes from the aminoacylation domain.
引用
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页码:578 / 582
页数:5
相关论文
共 34 条
[11]   ISOLEUCYL-TRANSFER RNA-SYNTHETASE FROM BAKERS-YEAST - MULTISTEP PROOFREADING IN DISCRIMINATION BETWEEN ISOLEUCINE AND VALINE WITH MODULATED ACCURACY, A SCHEME FOR MOLECULAR RECOGNITION BY ENERGY-DISSIPATION [J].
FREIST, W ;
PARDOWITZ, I ;
CRAMER, F .
BIOCHEMISTRY, 1985, 24 (24) :7014-7023
[12]   MECHANISMS OF AMINOACYL-TRANSFER RNA-SYNTHETASES - A CRITICAL CONSIDERATION OF RECENT RESULTS [J].
FREIST, W .
BIOCHEMISTRY, 1989, 28 (17) :6787-6795
[13]  
FUKAI S, UNPUB
[14]   Discrete determinants in transfer RNA for editing and aminoacylation [J].
Hale, SP ;
Auld, DS ;
Schmidt, E ;
Schimmel, P .
SCIENCE, 1997, 276 (5316) :1250-1252
[15]   KINETIC PROOFREADING - NEW MECHANISM FOR REDUCING ERRORS IN BIOSYNTHETIC PROCESSES REQUIRING HIGH SPECIFICITY [J].
HOPFIELD, JJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1974, 71 (10) :4135-4139
[16]   EFFECT OF CAVITY-CREATING MUTATIONS IN THE HYDROPHOBIC CORE OF CHYMOTRYPSIN INHIBITOR-2 [J].
JACKSON, SE ;
MORACCI, M ;
ELMASRY, N ;
JOHNSON, CM ;
FERSHT, AR .
BIOCHEMISTRY, 1993, 32 (42) :11259-11269
[17]   IMPROVED METHODS FOR BUILDING PROTEIN MODELS IN ELECTRON-DENSITY MAPS AND THE LOCATION OF ERRORS IN THESE MODELS [J].
JONES, TA ;
ZOU, JY ;
COWAN, SW ;
KJELDGAARD, M .
ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 :110-119
[18]   PROCHECK - A PROGRAM TO CHECK THE STEREOCHEMICAL QUALITY OF PROTEIN STRUCTURES [J].
LASKOWSKI, RA ;
MACARTHUR, MW ;
MOSS, DS ;
THORNTON, JM .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1993, 26 :283-291
[19]   Aminoacylation error correction [J].
Lin, L ;
Hale, SP ;
Schimmel, P .
NATURE, 1996, 384 (6604) :33-34
[20]   A LEFT-HANDED CROSSOVER INVOLVED IN AMIDOHYDROLASE CATALYSIS - CRYSTAL-STRUCTURE OF ERWINIA-CHRYSANTHEMI L-ASPARAGINASE WITH BOUND L-ASPARTATE [J].
MILLER, M ;
RAO, JKM ;
WLODAWER, A ;
GRIBSKOV, MR .
FEBS LETTERS, 1993, 328 (03) :275-279