Zooplankton abundance, biomass and community structure in the top 300m layer were studied along the 6degreesE meridian between 49 and 65degreesS during a Scandinavian/South African Joint Global Ocean Flux Study (December 1997-January 1998) onboard the S.A. Agulhas. Along the transect, total abundance and biomass of zooplankton ranged from 8 to 384 ind m(-3) and 1.4 to 64.1 mg DW m(-3), respectively. The general pattern in zooplankton distribution observed was an increase in density between Spring Ice Edge and the Antarctic Polar Front (APF) regions. Copepods numerically dominated zooplankton along the entire transect accounting for 68-97% of the total abundance and 24-90% of the total zooplankton standing stock. Other important contributors to total biomass, particularly within the Winter Ice Edge (WIE) and APF regions, were cnidarians and ctenophores (up to 50%), pteropods (up to 35%), tunicates (up to 30%), chaetognaths (up to 25%) and euphausiids (up to 23%). Numerical analyses identified three major zooplankton groupings, coinciding with the three regions of investigation. A dramatic change in the zooplankton composition occurred at the APF region as several copepod and euphausiid species were found on either side of the front only. A second change in the species composition was observed at the WIE, emphasizing the ecological importance of the frontal zone associated with the winter ice edge. (C) 2004 Elsevier Ltd. All rights reserved.