EMI domains are widespread and reveal the probable orthologs of the Caenorhabditis elegans CED-1 protein

被引:64
作者
Callebaut, I
Mignotte, V
Souchet, M
Mornon, JP
机构
[1] Univ Paris 06, CNRS UMR7590, LMCP, F-75252 Paris 05, France
[2] Univ Paris 07, CNRS UMR7590, LMCP, F-75252 Paris 05, France
[3] Inst Cochin Genet Mol, CNRS UMR8104, INSERM U567, Dept Hematol, F-91030 Paris, France
[4] CRG, Genset, F-91030 Evry, France
基金
澳大利亚研究理事会;
关键词
phagocytosis; apoptosis; extracellular module; beta ig-h3; fibrillin; PSI-BLAST; hydrophobic cluster analysis;
D O I
10.1016/S0006-291X(02)02904-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The EMI domain, first named after its presence in proteins of the EMILIN family, was identified here in several metazoan proteins with various domain architectures, among which the mammalian NEU1/NG3 proteins and Caenorhabditis elegans CED-1, identified as a transmembrane receptor that mediates cell corpse engulfment. Functional data available for EMILIN proteins suggest that the EMI domain could be a protein-protein interaction module. Sequence profiles specific of the EMI family of domains led to identify the probable orthologs of the C. elegans CED-1 protein in mammals and insects, which were yet uncovered. (C) 2002 Elsevier Science (USA). All rights reserved.
引用
收藏
页码:619 / 623
页数:5
相关论文
共 25 条
  • [1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [2] Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
  • [3] Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives
    Callebaut, I
    Labesse, G
    Durand, P
    Poupon, A
    Canard, L
    Chomilier, J
    Henrissat, B
    Mornon, JP
    [J]. CELLULAR AND MOLECULAR LIFE SCIENCES, 1997, 53 (08) : 621 - 645
  • [4] The EMILIN protein family
    Colombatti, A
    Doliana, E
    Bot, S
    Canton, A
    Mongiat, M
    Mungiguerra, G
    Paron-Cilli, S
    Spessotto, P
    [J]. MATRIX BIOLOGY, 2000, 19 (04) : 289 - 301
  • [5] EMI, a novel cysteine-rich domain of EMILINs and other extracellular proteins, interacts with the gClq domains and participates in multimerization
    Doliana, R
    Bot, S
    Bonaldo, P
    Colombatti, A
    [J]. FEBS LETTERS, 2000, 484 (02) : 164 - 168
  • [6] HYDROPHOBIC CLUSTER-ANALYSIS - AN EFFICIENT NEW WAY TO COMPARE AND ANALYZE AMINO-ACID-SEQUENCES
    GABORIAUD, C
    BISSERY, V
    BENCHETRIT, T
    MORNON, JP
    [J]. FEBS LETTERS, 1987, 224 (01): : 149 - 155
  • [7] Gattiker Alexandre, 2002, Appl Bioinformatics, V1, P107
  • [8] Hayward C, 1997, HUM MUTAT, V10, P415, DOI 10.1002/(SICI)1098-1004(1997)10:6<415::AID-HUMU1>3.3.CO
  • [9] 2-2
  • [10] THE CDNA SEQUENCE OF HUMAN ENDOTHELIAL-CELL MULTIMERIN - A UNIQUE PROTEIN WITH RGDS, COILED-COIL, AND EPIDERMAL GROWTH FACTOR-LIKE DOMAINS AND A CARBOXYL-TERMINUS SIMILAR TO THE GLOBULAR DOMAIN OF COMPLEMENT C1Q AND COLLAGENS TYPE-VIII AND TYPE-X
    HAYWARD, CPM
    HASSELL, JA
    DENOMME, GA
    RACHUBINSKI, RA
    BROWN, C
    KELTON, JG
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1995, 270 (31) : 18246 - 18251