Residue Environment Score for Selecting Protein Structure Models and Protein-Protein Docking Models

被引:0
|
作者
Kim, HyungRae [1 ]
机构
[1] Purdue Univ, W Lafayette, IN 47907 USA
关键词
D O I
10.1016/j.bpj.2015.11.1862
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
1707-Plat
引用
收藏
页码:346A / 346A
页数:1
相关论文
共 50 条
  • [1] A significance score for protein-protein interaction models through random docking
    McCoy, Katherine Maia
    Ackerman, Margaret E.
    Grigoryan, Gevorg
    PROTEIN SCIENCE, 2024, 33 (02)
  • [2] DockQ: A Quality Measure for Protein-Protein Docking Models
    Basu, Sankar
    Wallner, Bjorn
    PLOS ONE, 2016, 11 (08):
  • [3] A random forest classifier for protein-protein docking models
    Barradas-Bautista, Didier
    Cao, Zhen
    Vangone, Anna
    Oliva, Romina
    Cavallo, Luigi
    Gromiha, Michael
    BIOINFORMATICS ADVANCES, 2022, 2 (01):
  • [4] Protein-protein docking with interface residue restraints*
    Li, Hao
    Huang, Sheng-You
    CHINESE PHYSICS B, 2021, 30 (01)
  • [5] Finding correct protein-protein docking models using ProQDock
    Basu, Sankar
    Wallner, Bjorn
    BIOINFORMATICS, 2016, 32 (12) : 262 - 270
  • [6] Protein-protein docking with multiple residue conformations and residue substitutions
    Lorber, DM
    Udo, MK
    Shoichet, BK
    PROTEIN SCIENCE, 2002, 11 (06) : 1393 - 1408
  • [7] Protein-Protein Docking with Dynamic Residue Protonation States
    Kilambi, Krishna Praneeth
    Reddy, Kavan
    Gray, Jeffrey J.
    PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (12)
  • [8] Scoring of protein-protein docking models utilizing predicted interface residues
    Pozzati, Gabriele
    Kundrotas, Petras
    Elofsson, Arne
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2022, 90 (07) : 1493 - 1505
  • [9] Diffusion models in protein structure and docking
    Yim, Jason
    Staerk, Hannes
    Corso, Gabriele
    Jing, Bowen
    Barzilay, Regina
    Jaakkola, Tommi S.
    WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2024, 14 (02)
  • [10] Rigid Docking Based Protein-Protein Interaction Prediction using High Scoring Docking Models
    Matsuzaki, Yuri
    Simm, Jaak
    BIOPHYSICAL JOURNAL, 2016, 110 (03) : 327A - 327A