Higher-Resolution Structure of the Human Insulin Receptor Ectodomain: Multi-Modal Inclusion of the Insert Domain

被引:92
作者
Croll, Tristan I. [1 ]
Smith, Brian J. [2 ]
Margetts, Mai B. [3 ]
Whittaker, Jonathan [4 ]
Weiss, Michael A. [4 ,5 ,6 ]
Ward, Colin W. [3 ]
Lawrence, Michael C. [3 ,7 ]
机构
[1] Queensland Univ Technol, Inst Hlth & Biomed Innovat, Brisbane, Qld 4059, Australia
[2] La Trobe Univ, La Trobe Inst Mol Sci, Melbourne, Vic 3086, Australia
[3] Walter & Eliza Hall Inst Med Res, Struct Biol Div, Parkville, Vic 3052, Australia
[4] Case Western Reserve Univ, Dept Biochem, Cleveland, OH 44106 USA
[5] Case Western Reserve Univ, Dept Physiol, Cleveland, OH 44106 USA
[6] Case Western Reserve Univ, Dept Biomed Engn, Cleveland, OH 44106 USA
[7] Univ Melbourne, Dept Med Biol, Parkville, Vic 3010, Australia
基金
英国医学研究理事会; 美国国家卫生研究院;
关键词
MOLECULAR-DYNAMICS; MUTANT ALLELES; BINDING-SITES; RESISTANCE; REFINEMENT; ACTIVATION; MODEL; GENE;
D O I
10.1016/j.str.2015.12.014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Insulin receptor (IR) signaling is critical to controlling nutrient uptake and metabolism. However, only a low-resolution (3.8 angstrom) structure currently exists for the IR ectodomain, with some segments ill-defined or unmodeled due to disorder. Here, we revise this structure using new diffraction data to 3.3 angstrom resolution that allow improved modeling of the N-linked glycans, the first and third fibronectin type III domains, and the insert domain. A novel haptic interactive molecular dynamics strategy was used to aid fitting to low-resolution electron density maps. The resulting model provides a foundation for investigation of structural transitions in IR upon ligand binding.
引用
收藏
页码:469 / 476
页数:8
相关论文
共 36 条
[1]   INSULIN AND INSULIN-LIKE GROWTH-FACTOR RECEPTORS IN THE NERVOUS-SYSTEM [J].
ADAMO, M ;
RAIZADA, MK ;
LEROITH, D .
MOLECULAR NEUROBIOLOGY, 1989, 3 (1-2) :71-100
[2]   Integrating common and rare genetic variation in diverse human populations [J].
Altshuler, David M. ;
Gibbs, Richard A. ;
Peltonen, Leena ;
Dermitzakis, Emmanouil ;
Schaffner, Stephen F. ;
Yu, Fuli ;
Bonnen, Penelope E. ;
de Bakker, Paul I. W. ;
Deloukas, Panos ;
Gabriel, Stacey B. ;
Gwilliam, Rhian ;
Hunt, Sarah ;
Inouye, Michael ;
Jia, Xiaoming ;
Palotie, Aarno ;
Parkin, Melissa ;
Whittaker, Pamela ;
Chang, Kyle ;
Hawes, Alicia ;
Lewis, Lora R. ;
Ren, Yanru ;
Wheeler, David ;
Muzny, Donna Marie ;
Barnes, Chris ;
Darvishi, Katayoon ;
Hurles, Matthew ;
Korn, Joshua M. ;
Kristiansson, Kati ;
Lee, Charles ;
McCarroll, Steven A. ;
Nemesh, James ;
Keinan, Alon ;
Montgomery, Stephen B. ;
Pollack, Samuela ;
Price, Alkes L. ;
Soranzo, Nicole ;
Gonzaga-Jauregui, Claudia ;
Anttila, Verneri ;
Brodeur, Wendy ;
Daly, Mark J. ;
Leslie, Stephen ;
McVean, Gil ;
Moutsianas, Loukas ;
Nguyen, Huy ;
Zhang, Qingrun ;
Ghori, Mohammed J. R. ;
McGinnis, Ralph ;
McLaren, William ;
Takeuchi, Fumihiko ;
Grossman, Sharon R. .
NATURE, 2010, 467 (7311) :52-58
[3]   Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT [J].
Blanc, E ;
Roversi, P ;
Vonrhein, C ;
Flensburg, C ;
Lea, SM ;
Bricogne, G .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2210-2221
[4]  
Bricogne G., 2011, BUSTER VERSION 2 10
[5]   CHARMM: The Biomolecular Simulation Program [J].
Brooks, B. R. ;
Brooks, C. L., III ;
Mackerell, A. D., Jr. ;
Nilsson, L. ;
Petrella, R. J. ;
Roux, B. ;
Won, Y. ;
Archontis, G. ;
Bartels, C. ;
Boresch, S. ;
Caflisch, A. ;
Caves, L. ;
Cui, Q. ;
Dinner, A. R. ;
Feig, M. ;
Fischer, S. ;
Gao, J. ;
Hodoscek, M. ;
Im, W. ;
Kuczera, K. ;
Lazaridis, T. ;
Ma, J. ;
Ovchinnikov, V. ;
Paci, E. ;
Pastor, R. W. ;
Post, C. B. ;
Pu, J. Z. ;
Schaefer, M. ;
Tidor, B. ;
Venable, R. M. ;
Woodcock, H. L. ;
Wu, X. ;
Yang, W. ;
York, D. M. ;
Karplus, M. .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (10) :1545-1614
[6]   X-ray structure determination at low resolution [J].
Brunger, Axel T. ;
DeLaBarre, Byron ;
Davies, Jason M. ;
Weis, William I. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2009, 65 :128-133
[7]   QUANTITATION OF THE CLASS-I DISULFIDES OF THE INSULIN-RECEPTOR [J].
CHIACCHIA, KB .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1991, 176 (03) :1178-1182
[8]   Insulin resistance and AD-extending the translational path [J].
Craft, Suzanne .
NATURE REVIEWS NEUROLOGY, 2012, 8 (07) :360-362
[9]   Insulin/receptor binding: The last piece of the puzzle? [J].
De Meyts, Pierre .
BIOESSAYS, 2015, 37 (04) :389-397
[10]   THE HUMAN INSULIN-RECEPTOR CDNA - THE STRUCTURAL BASIS FOR HORMONE-ACTIVATED TRANSMEMBRANE SIGNALING [J].
EBINA, Y ;
ELLIS, L ;
JARNAGIN, K ;
EDERY, M ;
GRAF, L ;
CLAUSER, E ;
OU, JH ;
MASIARZ, F ;
KAN, YW ;
GOLDFINE, ID ;
ROTH, RA ;
RUTTER, WJ .
CELL, 1985, 40 (04) :747-758