High Expression of TIMELESS Predicts Poor Prognosis: A Potential Therapeutic Target for Skin Cutaneous Melanoma

被引:5
作者
Zhao, Shixin [1 ]
Wen, Shifeng [2 ]
Liu, Hengdeng [1 ]
Zhou, Ziheng [1 ]
Liu, Yiling [1 ]
Zhong, Jinbao [3 ]
Xie, Julin [1 ]
机构
[1] Sen Univ, Affiliated Hosp Sun Yat 1, Dept Burn Surg, Guangzhou, Peoples R China
[2] South China Univ Technol, Guangzhou Peoples Hosp 1, Sch Med, Dept Orthoped, Guangzhou, Peoples R China
[3] Guangzhou Inst Dermatol, Dept Dermatol, Guangzhou, Peoples R China
来源
FRONTIERS IN SURGERY | 2022年 / 9卷
基金
中国国家自然科学基金;
关键词
skin cutaneous melanoma; prognostic signature; overall survival; timeless; immune infiltration; bioinformatics; CIRCADIAN CLOCK; GENE-EXPRESSION; IMMUNE CELLS; T-CELLS; CANCER; METASTASIS; PROGRESSION; MIGRATION; PROMOTES; ADHESION;
D O I
10.3389/fsurg.2022.917776
中图分类号
R61 [外科手术学];
学科分类号
摘要
Background Skin cutaneous melanoma (SKCM) is the most lethal skin cancer with an increasing incidence worldwide. The poor prognosis of SKCM urgently requires us to discover prognostic biomarkers for accurate therapy. As a regulator of DNA replication, TIMELESS (TIM) has been found to be highly expressed in various malignancies but rarely reported in SKCM. The objective of this study was to evaluate the relationship between TIM and SKCM tumorigenesis and prognosis. Methods We obtained RNA sequencing data from TCGA and GTEx to analyze TIM expression and differentially expressed genes (DEGs). Subsequently, GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network were used to perform the functional enrichment analysis of TIM-related DEGs. Moreover, the receiver operating characteristic (ROC) curves, Cox regression analysis, Kaplan-Meier (K-M) analysis, and nomograms were applied to figure out the clinical significance of TIM in SKCM. In addition, we investigated the relationship between TIM promoter methylation and SKCM prognosis through the UALCAN database. Finally, the immunohistochemical (IHC) results of normal skin and SKCM were analyzed to determine expression differences. ResultsTIM was significantly elevated in various m alignancies, including SKCM, and high expression of TIM was associated with poor prognosis. Moreover, a total of 402 DEGs were identified between the two distinct TIM expression groups, and functional annotation showed enrichment with positive regulation of cell cycle and classic oncogenic pathways in the high TIM expression phenotype, while keratinization pathways were negatively regulated and enriched. Further analysis showed that TIM was correlated with infiltration of multiple immune cells. Finally, IHC validated the differential expression of TIM in SKCM. Conclusion TIM might play a pivotal role in tumorigenesis of SKCM and is closely related to its prognosis.
引用
收藏
页数:15
相关论文
共 48 条
  • [1] Bailey MH, 2018, CELL, V173, P371, DOI [10.1016/j.cell.2018.02.060, 10.1016/j.cell.2018.07.034]
  • [2] Target gene-independent functions of MYC oncoproteins
    Baluapuri, Apoorva
    Wolf, Elmar
    Eilers, Martin
    [J]. NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2020, 21 (05) : 255 - 267
  • [3] Requirement of mammalian Timeless for circadian rhythmicity
    Barnes, JW
    Tischkau, SA
    Barnes, JA
    Mitchell, JW
    Burgoon, PW
    Hickok, JR
    Gillette, MU
    [J]. SCIENCE, 2003, 302 (5644) : 439 - 442
  • [4] Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures
    Begik, Oguzhan
    Lucas, Morghan C.
    Liu, Huanle
    Miguel Ramirez, Jose
    Mattick, John S.
    Maria Novoa, Eva
    [J]. GENOME BIOLOGY, 2020, 21 (01)
  • [5] Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer
    Bindea, Gabriela
    Mlecnik, Bernhard
    Tosolini, Marie
    Kirilovsky, Amos
    Waldner, Maximilian
    Obenauf, Anna C.
    Angell, Helen
    Fredriksen, Tessa
    Lafontaine, Lucie
    Berger, Anne
    Bruneval, Patrick
    Fridman, Wolf Herman
    Becker, Christoph
    Pages, Franck
    Speicher, Michael R.
    Trajanoski, Zlatko
    Galon, Jerome
    [J]. IMMUNITY, 2013, 39 (04) : 782 - 795
  • [6] Loss of circadian clock gene expression is associated with tumor progression in breast cancer
    Cadenas, Cristina
    van de Sandt, Leonie
    Edlund, Karolina
    Lohr, Miriam
    Hellwig, Birte
    Marchan, Rosemarie
    Schmidt, Marcus
    Rahnenfuehrer, Joerg
    Oster, Henrik
    Hengstler, Jan G.
    [J]. CELL CYCLE, 2014, 13 (20) : 3282 - 3291
  • [7] E2F1/SP3/STAT6 axis is required for IL-4-induced epithelial-mesenchymal transition of colorectal cancer cells
    Chen, Jiaoe
    Gong, Chaoju
    Mao, Huiqin
    Li, Zhaoyun
    Fang, Zejun
    Chen, Qiang
    Lin, Min
    Jiang, Xiang
    Hu, Yanyan
    Wang, Wei
    Zhang, Xiaomin
    Chen, Xianjun
    Li, Hongzhang
    [J]. INTERNATIONAL JOURNAL OF ONCOLOGY, 2018, 53 (02) : 567 - 578
  • [8] Association of PD-1/PD-L axis expression with cytolytic activity, mutational load, and prognosis in melanoma and other solid tumors
    Danilova, Ludmila
    Wang, Hao
    Sunshine, Joel
    Kaunitz, Genevieve J.
    Cottrell, Tricia R.
    Xu, Haiying
    Esandrio, Jessica
    Anders, Robert A.
    Cope, Leslie
    Pardoll, Drew M.
    Drake, Charles G.
    Taube, Janis M.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (48) : E7769 - E7777
  • [9] CD4+ T Cells Regulate Pulmonary Metastasis of Mammary Carcinomas by Enhancing Protumor Properties of Macrophages
    DeNardo, David G.
    Barreto, Jairo B.
    Andreu, Pauline
    Vasquez, Lesley
    Tawfik, David
    Kolhatkar, Nikita
    Coussens, Lisa M.
    [J]. CANCER CELL, 2009, 16 (02) : 91 - 102
  • [10] Mammalian TIMELESS Is Involved in Period Determination and DNA Damage-Dependent Phase Advancing of the Circadian Clock
    Engelen, Erik
    Janssens, Roel C.
    Yagita, Kazuhiro
    Smits, Veronique A. J.
    van der Horst, Gijsbertus T. J.
    Tamanini, Filippo
    [J]. PLOS ONE, 2013, 8 (02):