Eight wild soybean accessions with different saponin phenotypes were used to examine saponin composition and relative saponin quantity in various tissues of mature seeds and two-week-old seedlings by LC-PDA/MS/MS. Saponin composition and content were varied according to tissues and accessions. The average total saponin concentration in 1 g mature dry seeds of wild soybean was 16.08 +/- 3.13 mu mol. In two-week-old seedlings, produced from 1 g mature seeds, it was 27.94 +/- 6.52 mu mol. Group A saponins were highly concentrated in seed hypocotyl (4.04 +/- 0.71 mu mol). High concentration of DDMP saponins (7.37 +/- 5.22 mu mol) and Sg-6 saponins (2.19 +/- 0.59 mu mol) was found in cotyledonary leaf. In seedlings, the amounts of group A and Sg-6 saponins reduced 2.3- and 1.3-folds, respectively, while DDMP + B + E saponins increased 2.5-fold than those of mature seeds. Our findings show that the group A and Sg-6 saponins in mature seeds were degraded and/or translocated by germination whereas DDMP saponins were newly synthesized.