Conexivisphaera calida gen. nov., sp. nov., a thermophilic sulfur-and iron-reducing archaeon, and proposal of Conexivisphaeraceae fam. nov., Conexivisphaerales ord. nov., and Conexivisphaeria class. nov. in the phylum Thaumarchaeota

被引:10
作者
Kato, Shingo [1 ]
Ohnishi, Masafumi [1 ,2 ]
Nagamori, Mai [1 ,2 ]
Yuki, Masahiro [1 ]
Takashina, Tomonori [2 ]
Ohkuma, Moriya [1 ]
Itoh, Takashi [1 ]
机构
[1] RIKEN, BioResource Res Ctr, Japan Collect Microorganisms, 3-1-1 Koyadai, Tsukuba, Ibaraki 3050074, Japan
[2] Toyo Univ, Grad Sch Life Sci, Oura, Gunma 3740193, Japan
关键词
archaea; terrestrial hot spring; thermophile; Thaumarchaeota; AMMONIA-OXIDIZING ARCHAEON; NITROSOSPHAERA-VIENNENSIS; DIVERSITY; PERSPECTIVES; CULTIVATION; ALIGNMENT; TOOL;
D O I
10.1099/ijsem.0.004595
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A thermoacidophilic, anaerobic, and iron- and sulfur-reducing archaeon, strain NAS-02(T), was isolated from a terrestrial hot spring in Japan, as previously reported. This organism is the first non-ammonia-oxidizing isolate in the phylum Thaumarchaeota. Here, we propose Conexivisphaera calida gen. nov., sp. nov. to accommodate this strain. The type strain of the type species is NAS-02(T) (=JCM 31663(T)=DSM 105898(T)). The values of 16S rRNA gene similarity and average amino acid identity between NAS-02(T) and its closest relatives are <86 and <42%, respectively. Based on the phylogeny and physiology, we propose the family Conexivisphaeraceae fam. nov., the order Conexivisphaerales ord. nov. and the class Conexivisphaeria class. nov. to accommodate the novel genus.
引用
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页码:1 / 4
页数:4
相关论文
共 30 条
[1]   Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome [J].
Abby, Sophie S. ;
Melcher, Michael ;
Kerou, Melina ;
Krupovic, Mart ;
Stieglmeier, Michaela ;
Rossel, Claudia ;
Pfeifer, Kevin ;
Schleper, Christa .
FRONTIERS IN MICROBIOLOGY, 2018, 9
[2]   The growing tree of Archaea: new perspectives on their diversity, evolution and ecology [J].
Adam, Panagiotis S. ;
Borrel, Guillaume ;
Brochier-Armanet, Celine ;
Gribaldo, Simonetta .
ISME JOURNAL, 2017, 11 (11) :2407-2425
[3]   Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences [J].
Barns, SM ;
Delwiche, CF ;
Palmer, JD ;
Pace, NR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (17) :9188-9193
[4]   Nitrosopumilus adriaticus sp. nov. and Nitrosopumilus piranensis sp. nov., two ammonia-oxidizing archaea from the Adriatic Sea and members of the class Nitrososphaeria [J].
Bayer, Barbara ;
Vojvoda, Jana ;
Reinthaler, Thomas ;
Reyes, Carolina ;
Pinto, Maria ;
Herndl, Gerhard J. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (07) :1892-1902
[5]   Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park [J].
Beam, Jacob P. ;
Jay, Zackary J. ;
Kozubal, Mark A. ;
Inskeep, William P. .
ISME JOURNAL, 2014, 8 (04) :938-951
[6]   Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota [J].
Brochier-Armanet, Celine ;
Boussau, Bastien ;
Gribaldo, Simonetta ;
Forterre, Patrick .
NATURE REVIEWS MICROBIOLOGY, 2008, 6 (03) :245-252
[7]   trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses [J].
Capella-Gutierrez, Salvador ;
Silla-Martinez, Jose M. ;
Gabaldon, Toni .
BIOINFORMATICS, 2009, 25 (15) :1972-1973
[8]  
Chaumeil P.-A., 2019, BIOINFORMATICS
[9]   IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes [J].
Chen, I-Min A. ;
Chu, Ken ;
Palaniappan, Krishna ;
Pillay, Manoj ;
Ratner, Anna ;
Huang, Jinghua ;
Huntemann, Marcel ;
Varghese, Neha ;
White, James R. ;
Seshadri, Rekha ;
Smirnova, Tatyana ;
Kirton, Edward ;
Jungbluth, Sean P. ;
Woyke, Tanja ;
Eloe-Fadrosh, Emiley A. ;
Ivanova, Natalia N. ;
Kyrpides, Nikos C. .
NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D666-D677
[10]   Cultivation and Genomic Analysis of "Candidatus Nitrosocaldus islandicus," an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland [J].
Daebeler, Anne ;
Herbold, Craig W. ;
Vierheilig, Julia ;
Sedlacek, Christopher J. ;
Pjevac, Petra ;
Albertsen, Mads ;
Kirkegaard, Rasmus H. ;
de la Torre, Jose R. ;
Daims, Holger ;
Wagner, Michael .
FRONTIERS IN MICROBIOLOGY, 2018, 9