Why is a proton transformed into a hydride by [NiFe] hydrogenases? An intrinsic reactivity analysis based on conceptual DFT

被引:13
作者
Qiu, Siyao [1 ]
Azofra, Luis Miguel [1 ,2 ]
MacFarlane, Douglas R. [1 ,2 ]
Sun, Chenghua [1 ,2 ]
机构
[1] Monash Univ, Fac Sci, Sch Chem, Clayton, Vic 3800, Australia
[2] Monash Univ, Fac Sci, Sch Chem, ARC Ctr Excellence Electromat Sci ACES, Clayton, Vic 3800, Australia
基金
澳大利亚研究理事会;
关键词
DENSITY-FUNCTIONAL THEORY; VULGARIS MIYAZAKI-F; ACTIVE-SITE MODELS; CATALYTIC CYCLE; OXIDIZED STATES; ELECTRONIC-STRUCTURE; ENERGY; ACTIVATION; EPR; CLASSIFICATION;
D O I
10.1039/c6cp00948d
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The hydrogen evolution reaction (HER) catalysed by [NiFe] hydrogenases entails a series of chemical events involving great mechanistic interest. In an attempt to understand and delve into the question about 'Why does nature work in that way?', an in-depth intrinsic reactivity analysis based on conceptual DFT has been carried out focusing on the so-called I1 to Ni-C step, i.e. our work tries to answer how and why the proton attached to the reactive sulphur atom from one of the exo-cyclic cysteine residues is transformed into a bridging hydride to be shared between the Ni/Fe metals in the active site of [NiFe] hydrogenases, which involves not only H migration, but also a change of the charge state on Ni from Ni(I) to Ni(III). Our DFT results suggest that the transformation is motivated by spontaneous rearrangements of the electron density, and stabilisation comes from the decrease of both electronic activity and electrophilicity index from Ni.
引用
收藏
页码:15369 / 15374
页数:6
相关论文
共 57 条
[1]   Dihydrogen bonds (A-H center dot center dot center dot H-B) [J].
Alkorta, I ;
Elguero, J ;
FocesFoces, C .
CHEMICAL COMMUNICATIONS, 1996, (14) :1633-1634
[2]   The future of energy supply: Challenges and opportunities [J].
Armaroli, Nicola ;
Balzani, Vincenzo .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46 (1-2) :52-66
[3]   Modeling the mechanism of glycosylation reactions between ethanol, 1,2-ethanediol and methoxymethanol [J].
Azofra, Luis Miguel ;
Alkorta, Ibon ;
Toro-Labbe, Alejandro ;
Elguero, Jose .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2013, 15 (33) :14026-14036
[4]   Mechanisms of Formation of Hemiacetals: Intrinsic Reactivity Analysis [J].
Azofra, Luis Miguel ;
Alkorta, Ibon ;
Elguero, Jose ;
Toro-Labbe, Alejandro .
JOURNAL OF PHYSICAL CHEMISTRY A, 2012, 116 (31) :8250-8259
[5]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[6]   The [NiFe] hydrogenase from Allochromatium vinosum studied in EPR-detectable states:: H/D exchange experiments that yield new information about the structure of the active site [J].
Bleijlevens, B ;
Faber, BW ;
Albracht, SPJ .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2001, 6 (08) :763-769
[7]   [NiFe]-hydrogenases of Ralstonia eutropha H16:: Modular enzymes for oxygen-tolerant biological hydrogen oxidation [J].
Burgdorf, T ;
Lenz, O ;
Buhrke, T ;
van der Linden, E ;
Jones, AK ;
Albracht, SPJ ;
Friedrich, B .
JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY, 2005, 10 (2-4) :181-196
[8]   Solar Energy Supply and Storage for the Legacy and Non legacy Worlds [J].
Cook, Timothy R. ;
Dogutan, Dilek K. ;
Reece, Steven Y. ;
Surendranath, Yogesh ;
Teets, Thomas S. ;
Nocera, Daniel G. .
CHEMICAL REVIEWS, 2010, 110 (11) :6474-6502
[9]   FTIR spectroelectrochemical study of the activation and inactivation processes of [NiFe] hydrogenases:: effects of solvent isotope replacement and site-directed mutagenesis [J].
De Lacey, AL ;
Pardo, A ;
Fernández, VM ;
Dementin, S ;
Adryanczyk-Perrier, G ;
Hatchikian, EC ;
Rousset, M .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2004, 9 (05) :636-642
[10]   Activation and inactivation of hydrogenase function and the catalytic cycle:: Spectroelectrochemical studies [J].
De lacey, Antonio L. ;
Fernandez, Victor M. ;
Rousset, Marc ;
Cammack, Richard .
CHEMICAL REVIEWS, 2007, 107 (10) :4304-4330