Improved applicability and robustness of fast cryo-electron tomography data acquisition

被引:53
|
作者
Eisenstein, Fabian [1 ]
Danev, Radostin [2 ]
Pilhofer, Martin [1 ]
机构
[1] Eidgenoss TH Zurich, Inst Mol Biol & Biophys, Dept Biol, Otto Stern Weg 5, CH-8093 Zurich, Switzerland
[2] Univ Tokyo, Grad Sch Med, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1130033, Japan
基金
日本学术振兴会; 日本科学技术振兴机构; 瑞士国家科学基金会; 欧洲研究理事会;
关键词
Cryo-electron tomography; Electron cryotomography; Cryo-EM; Tilt series; Data acquisition; Throughput; K2; K3; Calibration; STRUCTURAL BIOLOGY; IN-SITU; SUBTOMOGRAM;
D O I
10.1016/j.jsb.2019.08.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The power of cryo-electron tomography (cryoET) lies in its capability to characterize macromolecules in their cellular context. Structure determination by cryoET, however, is time-consuming compared to single particle approaches. A recent study reported significant acceleration of data acquisition by a fast-incremental single-exposure (FISE) tilt series scheme. Here we improved the method and evaluated its efficiency and performance. We show that (1) FISE combined with the latest generation of direct electron detectors speeds up collection considerably, (2) previous generation (pre-2017) double-tilt axis Titan Krios holders are also suitable for FISE data acquisition, (3) x, y and z-specimen shifts can be compensated for, and (4) FISE tilt series data can generate averages of sub-nanometer resolution. These advances will allow for a widespread adoption of cryoET for high-throughput in situ studies and high-resolution structure determination across different biological research disciplines.
引用
收藏
页码:107 / 114
页数:8
相关论文
共 50 条
  • [21] Automatic detection of alignment errors in cryo-electron tomography
    de Isidro-Gomez, F. P.
    Vilas, J. L.
    Carazo, J. M.
    Sorzano, C. O. S.
    JOURNAL OF STRUCTURAL BIOLOGY, 2025, 217 (01)
  • [22] Bringing Structure to Cell Biology with Cryo-Electron Tomography
    Young, Lindsey N.
    Villa, Elizabeth
    ANNUAL REVIEW OF BIOPHYSICS, 2023, 52 : 573 - 595
  • [23] Structural Analysis of Supramolecular Assemblies by Cryo-Electron Tomography
    Harapin, Jan
    Eibauer, Matthias
    Medalia, Ohad
    STRUCTURE, 2013, 21 (09) : 1522 - 1530
  • [24] Current data processing strategies for cryo-electron and
    Pyle, Euan
    Zanetti, Giulia
    BIOCHEMICAL JOURNAL, 2021, 478 (10) : 1827 - 1845
  • [25] Statistical spatial analysis for cryo-electron tomography
    Martinez-Sanchez, Antonio
    Baumeister, Wolfgang
    Lucic, Vladan
    COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2022, 218
  • [26] Dynamics of antibodies from cryo-electron tomography
    Bongini, L
    Fanelli, D
    Piazza, F
    Rios, PD
    Sandin, S
    Skoglund, U
    BIOPHYSICAL CHEMISTRY, 2005, 115 (2-3) : 235 - 240
  • [27] Cryo-electron tomography pipeline for plasma membranes
    Sun, Willy W.
    Michalak, Dennis J.
    Sochacki, Kem A.
    Kunamaneni, Prasanthi
    Alfonzo-Mendez, Marco A.
    Arnold, Andreas M.
    Strub, Marie-Paule
    Hinshaw, Jenny E.
    Taraska, Justin W.
    NATURE COMMUNICATIONS, 2025, 16 (01)
  • [28] Procentriole assembly revealed by cryo-electron tomography
    Guichard, Paul
    Chretien, Denis
    Marco, Sergio
    Tassin, Anne-Marie
    EMBO JOURNAL, 2010, 29 (09) : 1565 - 1572
  • [29] Cryo-Electron Tomography Studies of Cell Systems
    Kamyshinsky, R. A.
    Chesnokov, Y. M.
    Orekhov, A. S.
    CRYSTALLOGRAPHY REPORTS, 2020, 65 (05) : 744 - 748
  • [30] Cryo-electron tomography to study viral infection
    Graham, Miles
    Zhang, Peijun
    BIOCHEMICAL SOCIETY TRANSACTIONS, 2023, 51 (04) : 1701 - 1711