A Comparative Cross-Platform Meta-Analysis to Identify Potential Biomarker Genes Common to Endometriosis and Recurrent Pregnancy Loss

被引:2
作者
Guha, Pokhraj [1 ]
Roychoudhury, Shubhadeep [2 ]
Singha, Sobita [2 ]
Kalita, Jogen C. [3 ]
Kolesarova, Adriana [4 ]
Jamal, Qazi Mohammad Sajid [5 ]
Jha, Niraj Kumar [6 ]
Kumar, Dhruv [7 ]
Ruokolainen, Janne [8 ]
Kesari, Kavindra Kumar [8 ]
机构
[1] Garhbeta Coll, Dept Zool, Paschim Medinipur 721127, India
[2] Assam Univ, Dept Life Sci & Bioinformat, Silchar 788011, India
[3] Gauhati Univ, Dept Zool, Gauhati 781014, India
[4] Slovak Univ Agr, Fac Biotechnol & Food Sci, Nitra 94976, Slovakia
[5] Qassim Univ, Coll Publ Hlth & Hlth Informat, Dept Hlth Informat, Al Bukayriyah 52741, Saudi Arabia
[6] Sharda Univ, Sch Engn & Technol, Dept Biotechnol, Greater Noida 201310, India
[7] Amity Univ, Amity Inst Mol Med & Stem Cell Res, Noida 201313, Uttar Pradesh, India
[8] Aalto Univ, Dept Appl Phys, Espoo 00076, Finland
来源
APPLIED SCIENCES-BASEL | 2021年 / 11卷 / 08期
关键词
endometriosis; recurrent pregnancy loss; meta-analysis; functional enrichment; TWIST2; gene; CRYO-EM STRUCTURE; BETA-CATENIN; CELL-PROLIFERATION; EXPRESSION; GENETICS; COMPLEX; PROTEIN; MISCARRIAGE; CYTOSCAPE; MUTATION;
D O I
10.3390/app11083349
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Endometriosis is characterized by unwanted growth of endometrial tissue in different locations of the female reproductive tract. It may lead to recurrent pregnancy loss, which is one of the worst curses for the reproductive age group of human populations around the world. Thus, there is an urgent need for unveiling any common source of origin of both these diseases and connections, if any. Herein, we aimed to identify common potential biomarker genes of these two diseases via in silico approach using meta-analysis of microarray data. Datasets were selected for the study based on certain exclusion criteria. Those datasets were subjected to comparative meta-analyses for the identification of differentially expressed genes (DEGs), that are common to both diagnoses. The DEGs were then subjected to protein-protein networking and subsequent functional enrichment analyses for unveiling their role/function in connecting two diseases. From the analyses, 120 DEGs are reported to be significant out of which four genes have been found to be prominent. These include the CTNNB1, HNRNPAB, SNRPF and TWIST2 genes. The significantly enriched pathways based on the above-mentioned genes are mainly centered on signaling and developmental events. These findings could significantly elucidate the underlying molecular events in endometriosis-based recurrent miscarriages.
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页数:17
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