The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell

被引：545

作者：

Junier, Thomas ^{[1
,2
]}

Zdobnov, Evgeny M. ^{[1
,2
,3
]}

机构：

[1] Univ Geneva, Sch Med, Dept Genet Med & Dev, CH-1211 Geneva, Switzerland

[2] Swiss Inst Bioinformat, CH-1211 Geneva, Switzerland

[3] Univ London Imperial Coll Sci Technol & Med, London SW7 2AZ, England

来源：

BIOINFORMATICS | 2010年 / 26卷 / 13期

基金：

瑞士国家科学基金会;

关键词：

D O I：

10.1093/bioinformatics/btq243

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

We present a suite of UNIX shell programs for processing any number of phylogenetic trees of any size. They perform frequently-used tree operations without requiring user interaction. They also allow tree drawing as scalable vector graphics (SVG), suitable for high-quality presentations and further editing, and as ASCII graphics for command-line inspection. As an example we include an implementation of bootscanning, a procedure for finding recombination breakpoints in viral genomes.

引用

页码：1669 / 1670

页数：2

共 12 条

[1] MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].