The transcriptome in blood: Challenges and solutions for robust expression profiling

被引:52
作者
Fan, HT [1 ]
Hegde, PS [1 ]
机构
[1] GlasoSmithKline, Dept Transcriptome Anal, Genet Res, Genom & Proteom Sci, Collegeville, PA 19426 USA
关键词
blood collection; gene expression profiling;
D O I
10.2174/1566524053152861
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Peripheral blood may be the most feasible tissue source in clinical assessment of differences in gene expression between diseases and drug treatments due to accessibility. Yet, gene expression profiling from blood remains a challenge. Blood is a complicated biological system consisting of a variety of cell types at different stages of development. In addition, blood is also one of the most variable tissue types for gene expression analysis. The success of a blood microarray study depends on the choice of cell isolation method and preparation technique. In this review, we give a brief overview of the current status of using blood as a source for expression profiling and discuss potential applications of this method in the practices of clinical research.
引用
收藏
页码:3 / 10
页数:8
相关论文
共 48 条
[11]  
Fotino M, 1971, Ann Clin Lab Sci, V1, P131
[12]   Clinical biomarkers in drug discovery and development [J].
Frank, R ;
Hargreaves, R .
NATURE REVIEWS DRUG DISCOVERY, 2003, 2 (07) :566-580
[13]   Lymphocytes as a neural probe: potential for studying psychiatric disorders [J].
Gladkevich, A ;
Kauffman, HF ;
Korf, J .
PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY, 2004, 28 (03) :559-576
[14]  
Harmening D., 1997, CLIN HEMATOLOGY FUND
[15]   Ex vivo induction of cytokine mRNA expression in human blood samples [J].
Härtel, C ;
Bein, G ;
Müller-Steinhardt, M ;
Klüter, H .
JOURNAL OF IMMUNOLOGICAL METHODS, 2001, 249 (1-2) :63-71
[16]   Relation between resistance of Philadelphia-chromosome-positive acute lymphoblastic leukaemia to the tyrosine kinase inhibitor ST1571 and gene-expression profiles: a gene-expression study [J].
Hofmann, WK ;
de Vos, S ;
Elashoff, D ;
Gschaidmeier, H ;
Hoelzer, D ;
Koeffler, HP ;
Ottmann, OG .
LANCET, 2002, 359 (9305) :481-486
[17]  
Irwin M, 1999, ADV EXP MED BIOL, V461, P1
[18]   Psychoneuroimmunology of depression: Clinical implications [J].
Irwin, M .
BRAIN BEHAVIOR AND IMMUNITY, 2002, 16 (01) :1-16
[19]  
Joos L, 2003, SWISS MED WKLY, V133, P31
[20]   Molecular characterization of acute leukemias by use of microarray technology [J].
Kohlmann, A ;
Schoch, C ;
Schnittger, S ;
Dugas, M ;
Hiddemann, W ;
Kern, W ;
Haferlach, T .
GENES CHROMOSOMES & CANCER, 2003, 37 (04) :396-405