Genomics and the challenging translation into conservation practice

被引：392

作者：

Shafer, Aaron B. A. ^{[1
]}

Wolf, Jochen B. W. ^{[1
]}

Alves, Paulo C. ^{[2
]}

Bergstrom, Linnea ^{[1
]}

Bruford, Michael W. ^{[3
]}

Brannstrom, Ioana ^{[1
]}

Colling, Guy ^{[4
]}

Dalen, Love ^{[5
]}

De Meester, Luc ^{[6
]}

Ekblom, Robert ^{[1
]}

Fawcett, Katie D. ^{[7
]}

Fior, Simone ^{[8
]}

Hajibabaei, Mehrdad ^{[9
]}

Hill, Jason A. ^{[10
]}

Hoezel, A. Rus ^{[11
]}

Hoglund, Jacob ^{[1
]}

Jensen, Evelyn L. ^{[12
]}

Krause, Johannes ^{[13
]}

Kristensen, Torsten N. ^{[14
]}

Kruetzen, Michael ^{[15
]}

McKay, John K. ^{[16
]}

Norman, Anita J. ^{[17
]}

Ogden, Rob ^{[18
]}

Osterling, E. Martin ^{[19
]}

Ouborg, N. Joop ^{[20
]}

Piccolo, John ^{[19
]}

Popovic, Danijela ^{[21
]}

Primmer, Craig R. ^{[22
]}

Reed, Floyd A. ^{[23
]}

Roumet, Marie ^{[8
]}

Salmona, Jordi ^{[24
]}

Schenekar, Tamara ^{[25
]}

Schwartz, Michael K. ^{[26
]}

Segelbacher, Gernot ^{[27
]}

Senn, Helen ^{[18
]}

Thaulow, Jens ^{[28
]}

Valtonen, Mia ^{[29
]}

Veale, Andrew ^{[12
]}

Vergeer, Philippine ^{[30
]}

Vijay, Nagarjun ^{[1
]}

Vila, Caries ^{[31
]}

Weissensteiner, Matthias ^{[1
]}

Wennerstrom, Lovisa ^{[10
]}

Wheat, Christopher W. ^{[10
]}

Zielinski, Piotr ^{[32
]}

机构：

[1] Uppsala Univ, Ecol & Genet Evolutionary Biol Ctr, S-75236 Uppsala, Sweden

[2] Univ Porto, Fac Ciencias, CIBIO InBIO, P-4485661 Porto, Portugal

[3] Cardiff Univ, Sch Biosci, Cardiff CF10 3AX, S Glam, Wales

[4] Musee Natl Hist Nat Luxembourg, L-2160 Luxembourg, Luxembourg

[5] Swedish Museum Nat Hist, S-10405 Stockholm, Sweden

[6] Katholieke Univ Leuven, B-3000 Louvain, Belgium

[7] Univ Groningen, Behav Ecol & Selforg, NL-9712 Groningen, Netherlands

[8] ETH, CH-8092 Zurich, Switzerland

[9] Univ Guelph, Guelph, ON N1G 2W1, Canada

[10] Univ Stockholm, S-10691 Stockholm, Sweden

[11] Univ Durham, Durham DH1 3LE, England

[12] Univ British Columbia Okanagan, Kelowna, BC V1V 1V7, Canada

[13] Univ Tubingen, D-72070 Tubingen, Germany

[14] Aalborg Univ, DK-9220 Aalborg, Denmark

[15] Univ Zurich, Anthropol Inst & Museum, CH-8057 Zurich, Switzerland

[16] Colorado State Univ, Ft Collins, CO 80523 USA

[17] Swedish Univ Agr Sci, S-90183 Umea, Sweden

[18] Royal Zool Soc Scotland, WildGenes Lab, Edinburgh EH12 6TS, Midlothian, Scotland

[19] Karlstad Univ, S-65188 Karlstad, Sweden

[20] Radboud Univ Nijmegan, NL-6500 GL Nijmegen, Netherlands

[21] Univ Warsaw, Ctr New Technol, PL-00681 Warsaw, Poland

[22] Univ Turku, Turku 20014, Finland

[23] Univ Hawaii Manoa, Honolulu, HI 96822 USA

[24] Inst Gulbenkian Ciencias, Populat & Conservat Genet Grp, P-2780156 Oeiras, Portugal

[25] Karl Franzens Univ Graz, A-8010 Graz, Austria

[26] USDA, Forest Serv, Rocky Mt Res Stn, Ft Collins, CO USA

[27] Univ Freiburg, D-79106 Freiburg, Germany

[28] Norwegian Inst Water Res, N-0349 Oslo, Norway

[29] Univ Eastern Finland, Joensuu 80101, Finland

[30] Wageningen Univ, NL-6708 PB Wageningen, Netherlands

[31] Conservat & Evolutionary Genet Grp, Estac Biol Donana, Almonte 41092, Spain

[32] Jagiellonian Univ, Inst Environm Sci, PL-30387 Krakow, Poland

来源：

TRENDS IN ECOLOGY & EVOLUTION | 2015年 / 30卷 / 02期

基金：

瑞典研究理事会;

关键词：

GENETIC DIVERSITY; BACKGROUND SELECTION; INSULAR POPULATION; DIVERGENCE; DNA; SPECIATION; SEQUENCE; RESCUE; DISEQUILIBRIUM; MICROSATELLITE;

D O I：

10.1016/j.tree.2014.11.009

中图分类号：

Q14 [生态学（生物生态学）];

学科分类号：

071012 ; 0713 ;

摘要：

The global loss of biodiversity continues at an alarming rate. Genomic approaches have been suggested as a promising tool for conservation practice as scaling up to genome-wide data can improve traditional conservation genetic inferences and provide qualitatively novel insights. However, the generation of genomic data and subsequent analyses and interpretations remain challenging and largely confined to academic research in ecology and evolution. This generates a gap between basic research and applicable solutions for conservation managers faced with multifaceted problems. Before the real-world conservation potential of genomic research can be realized, we suggest that current infrastructures need to be modified, methods must mature, analytical pipelines need to be developed, and successful case studies must be disseminated to practitioners.

引用

页码：78 / 87

页数：10

共 90 条

[1] Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana [J].

Agren, Jon ;

Oakley, Christopher G. ;

McKay, John K. ;

Lovell, John T. ;

Schemske, Douglas W. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (52) :21077-21082

[2] Genomics and the future of conservation genetics [J].

Allendorf, Fred W. ;

Hohenlohe, Paul A. ;

Luikart, Gordon .

NATURE REVIEWS GENETICS, 2010, 11 (10) :697-709

[3] Genomic toolboxes for conservation biologists [J].

Angeloni, Francesco ;

Wagemaker, Niels ;

Vergeer, Philippine ;

Ouborg, Joop .

EVOLUTIONARY APPLICATIONS, 2012, 5 (02) :130-143

[4] The role of hybridization in evolution [J].

Barton, NH .

MOLECULAR ECOLOGY, 2001, 10 (03) :551-568

[5] Unlocking the vault: next-generation museum population genomics [J].

Bi, Ke ;

Linderoth, Tyler ;

Vanderpool, Dan ;

Good, Jeffrey M. ;

Nielsen, Rasmus ;

Moritz, Craig .

MOLECULAR ECOLOGY, 2013, 22 (24) :6018-6032

[6] Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation [J].

Bonin, Aurelie ;

Nicole, Florence ;

Pompanon, Francois ;

Miaud, Claude ;

Taberlet, Pierre .

CONSERVATION BIOLOGY, 2007, 21 (03) :697-708

[7] Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis [J].

Bos, Kirsten I. ;

Harkins, Kelly M. ;

Herbig, Alexander ;

Coscolla, Mireia ;

Weber, Nico ;

Comas, Inaki ;

Forrest, Stephen A. ;

Bryant, Josephine M. ;

Harris, Simon R. ;

Schuenemann, Verena J. ;

Campbell, Tessa J. ;

Majander, Kerttu ;

Wilbur, Alicia K. ;

Guichon, Ricardo A. ;

Steadman, Dawnie L. Wolfe ;

Cook, Della Collins ;

Niemann, Stefan ;

Behr, Marcel A. ;

Zumarraga, Martin ;

Bastida, Ricardo ;

Huson, Daniel ;

Nieselt, Kay ;

Young, Douglas ;

Parkhill, Julian ;

Buikstra, Jane E. ;

Gagneux, Sebastien ;

Stone, Anne C. ;

Krause, Johannes .

NATURE, 2014, 514 (7523) :494-+

[8] How does adaptation sweep through the genome? Insights from long-term selection experiments [J].

Burke, Molly K. .

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2012, 279 (1749) :5029-5038

[9] Evolutionary rescue in a changing world [J].

Carlson, Stephanie M. ;

Cunningham, Curry J. ;

Westley, Peter A. H. .

TRENDS IN ECOLOGY & EVOLUTION, 2014, 29 (09) :521-530

[10] Applying evolutionary biology to address global challenges [J].

Carroll, Scott P. ;

Jorgensen, Peter Sogaard ;

Kinnison, Michael T. ;

Bergstrom, Carl T. ;

Denison, R. Ford ;

Gluckman, Peter ;

Smith, Thomas B. ;

Strauss, Sharon Y. ;

Tabashnik, Bruce E. .

SCIENCE, 2014, 346 (6207) :313-+

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