Functional roles for noise in genetic circuits

被引:1080
作者
Eldar, Avigdor [1 ]
Elowitz, Michael B. [1 ]
机构
[1] CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA
基金
美国国家科学基金会;
关键词
SINGLE-MOLECULE LEVEL; TO-CELL VARIABILITY; FLUCTUATING ENVIRONMENTS; BACILLUS-SUBTILIS; SACCHAROMYCES-CEREVISIAE; PRIMITIVE ENDODERM; PROTEIN EXPRESSION; ESCHERICHIA-COLI; BACTERIAL-CELL; DIFFERENTIATION;
D O I
10.1038/nature09326
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The genetic circuits that regulate cellular functions are subject to stochastic fluctuations, or 'noise', in the levels of their components. Noise, far from just a nuisance, has begun to be appreciated for its essential role in key cellular activities. Noise functions in both microbial and eukaryotic cells, in multicellular development, and in evolution. It enables coordination of gene expression across large regulons, as well as probabilistic differentiation strategies that function across cell populations. At the longest timescales, noise may facilitate evolutionary transitions. Here we review examples and emerging principles that connect noise, the architecture of the gene circuits in which it is present, and the biological functions it enables. We further indicate some of the important challenges and opportunities going forward.
引用
收藏
页码:167 / 173
页数:7
相关论文
共 77 条
  • [1] Stochastic switching as a survival strategy in fluctuating environments
    Acar, Murat
    Mettetal, Jerome T.
    van Oudenaarden, Alexander
    [J]. NATURE GENETICS, 2008, 40 (04) : 471 - 475
  • [2] Alternatives to binary fission in bacteria
    Angert, ER
    [J]. NATURE REVIEWS MICROBIOLOGY, 2005, 3 (03) : 214 - 224
  • [3] Bacterial persistence as a phenotypic switch
    Balaban, NQ
    Merrin, J
    Chait, R
    Kowalik, L
    Leibler, S
    [J]. SCIENCE, 2004, 305 (5690) : 1622 - 1625
  • [4] Noise in protein expression scales with natural protein abundance
    Bar-Even, Arren
    Paulsson, Johan
    Maheshri, Narendra
    Carmi, Miri
    O'Shea, Erin
    Pilpel, Yitzhak
    Barkai, Naama
    [J]. NATURE GENETICS, 2006, 38 (06) : 636 - 643
  • [5] Experimental evolution of bet hedging
    Beaumont, Hubertus J. E.
    Gallie, Jenna
    Kost, Christian
    Ferguson, Gayle C.
    Rainey, Paul B.
    [J]. NATURE, 2009, 462 (7269) : 90 - U97
  • [7] Noise in eukaryotic gene expression
    Blake, WJ
    Kærn, M
    Cantor, CR
    Collins, JJ
    [J]. NATURE, 2003, 422 (6932) : 633 - 637
  • [8] Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription
    Boeger, Hinrich
    Griesenbeck, Joachim
    Kornberg, Roger D.
    [J]. CELL, 2008, 133 (04) : 716 - 726
  • [9] Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits
    Cagatay, Tolga
    Turcotte, Marc
    Elowitz, Michael B.
    Garcia-Ojalvo, Jordi
    Suel, Guerol M.
    [J]. CELL, 2009, 139 (03) : 512 - 522
  • [10] Stochastic protein expression in individual cells at the single molecule level
    Cai, L
    Friedman, N
    Xie, XS
    [J]. NATURE, 2006, 440 (7082) : 358 - 362