Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments

被引：1258

作者：

Bernard, Hans-Ulrich ^{[1
,2
]}

Burk, Robert D. ^{[3
,4
,5
,6
]}

Chen, Zigui ^{[3
]}

van Doorslaer, Koenraad ^{[3
]}

zur Hausen, Harald ^{[7
]}

de Villiers, Ethel-Michele ^{[7
]}

机构：

[1] Univ Calif Irvine, Dept Mol Biol & Biochem, Irvine, CA 92697 USA

[2] Univ Calif Irvine, Program Publ Hlth, Irvine, CA 92697 USA

[3] Albert Einstein Coll Med, Dept Microbiol & Immunol, Bronx, NY 10467 USA

[4] Albert Einstein Coll Med, Dept Pediat, Bronx, NY 10467 USA

[5] Albert Einstein Coll Med, Dept Epidemiol & Populat Hlth, Bronx, NY 10467 USA

[6] Albert Einstein Coll Med, Dept Obstet Gynecol & Womens Hlth, Bronx, NY 10467 USA

[7] Deutsch Krebsforschungszentrum, Div Characterizat Tumor Viruses, D-6900 Heidelberg, Germany

来源：

VIROLOGY | 2010年 / 401卷 / 01期

关键词：

Papillomavirus; Taxonomy; Nomenclature; Family; Genus; Species; Type; Strain; Reference center; ROLLING-CIRCLE AMPLIFICATION; COMPLETE GENOME SEQUENCE; NUCLEOTIDE-SEQUENCE; MOLECULAR-CLONING; GENETIC-CHARACTERIZATION; AVIAN PAPILLOMAVIRUSES; PAPILLOMATOUS LESIONS; PHYLOGENETIC ANALYSIS; ORAL PAPILLOMAVIRUS; ORGANIZATION;

D O I：

10.1016/j.virol.2010.02.002

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

We present an expansion of the classification of the family Papillomaviridae, which now contains 29 genera formed by 189 papillomavirus (PV) types isolated from humans (120 types), non-human mammals, birds and reptiles (64, 3 and 2 types, respectively). To accommodate the number of PV genera exceeding the Greek alphabet, the prefix "dyo" is used, continuing after the Omega-PVs with Dyodelta-PVs. The current set of human PVs is contained within five genera, whereas mammalian, avian and reptile PVs are contained within 20,3 and 1 genera, respectively. We propose standardizations to the names of a number of animal PVs. As prerequisite for a coherent nomenclature of animal PVs, we propose founding a reference center for animal PVs. We discuss that based on emerging species concepts derived from genome sequences. PV types could be promoted to the taxonomic level of species, but we do not recommend implementing this change at the current time. (C) 2010 Elsevier Inc. All rights reserved.

引用

页码：70 / 79

页数：10

共 82 条

[21] MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].

Edgar, RC .

NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797

[22] Characterisation of the first complete genome sequence of the roe deer (Capreolus capreolus) papillomavirus [J].

Erdelyi, Karoly ;

Balint, Adam ;

Dencso, Laszlo ;

Dan, Adam ;

Ursu, Krisztina .

VIRUS RESEARCH, 2008, 135 (02) :307-311

[23]

Galtier N, 1996, COMPUT APPL BIOSCI, V12, P543

[24] Equine papillomavirus type 1: complete nucleotide sequence and characterization of recombinant virus-like particles composed of the EcPV-1 L1 major capsid protein [J].

Ghim, SJ ;

Rector, A ;

Delius, H ;

Sundberg, JP ;

Jenson, AB ;

Van Ranst, M .

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2004, 324 (03) :1108-1115

[25] A broader definition of 'the virus species' [J].

Gibbs, AJ ;

Gibbs, MJ .

ARCHIVES OF VIROLOGY, 2006, 151 (07) :1419-1422

[26] GENOMIC STRUCTURE OF THE COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS [J].

GIRI, I ;

DANOS, O ;

YANIV, M .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (06) :1580-1584

[27] MOLECULAR-CLONING AND NUCLEOTIDE-SEQUENCE OF DEER PAPILLOMAVIRUS [J].

GROFF, DE ;

LANCASTER, WD .

JOURNAL OF VIROLOGY, 1985, 56 (01) :85-91

[28] Genomic and phylogenetic analysis of two novel bovine papillomaviruses, BPV-9 and BPV-10 [J].

Hatama, Shinichi ;

Nobumoto, Kiyoko ;

Kanno, Toru .

JOURNAL OF GENERAL VIROLOGY, 2008, 89 :158-163

[29] Genomic characterization of two novel reptilian papillomaviruses, Chelonia mydas papillomavirus 1 and Caretta caretta papillomavirus 1 [J].

Herbst, Lawrence H. ;

Lenz, Jack ;

Van Doorslaer, Koenraad ;

Chen, Zigui ;

Stacy, Brian A. ;

Wellehan, James F. X., Jr. ;

Manire, Charles A. ;

Burk, Robert D. .

VIROLOGY, 2009, 383 (01) :131-135

[30] MRBAYES: Bayesian inference of phylogenetic trees [J].

Huelsenbeck, JP ;

Ronquist, F .

BIOINFORMATICS, 2001, 17 (08) :754-755

← 1 2 3 4 5 6 7 8 9 →