Whole-Genome Sequencing of Mycobacterium tilburgii Strain MEPHI

被引：1

作者：

Saad, Jamal ^{[1
,2
]}

Drancourt, Michel ^{[2
]}

Hannan, Margaret M. ^{[3
]}

Stapleton, Patrick J. ^{[3
]}

Lapierre, Simon Grandjean ^{[4
]}

机构：

[1] IHU Mediterranee Infect, Marseille, France

[2] Aix Marseille Univ, IHU Mediterranee Infect, MEPHI, IRD, Marseille, France

[3] Univ Coll Dublin, Mater Misericordiae Univ Hosp, Dublin, Ireland

[4] CRCHUM, Montreal, PQ, Canada

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 40期

关键词：

ALGORITHM;

D O I：

10.1128/MRA.00933-19

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Mycobacterium tilburgii is a fastidious mycobacterium which has previously been reported to cause severe disseminated infections. Genome sequencing of the M. tilburgii MEPHI clinical isolate yielded 3.14 Mb, with 66.3% GC content, and confirmed phylogenetic placement within the Mycobacterium simiae complex.

引用

页数：3

共 14 条

[1] Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison [J].

Auch, Alexander F. ;

von Jan, Mathias ;

Klenk, Hans-Peter ;

Goeker, Markus .

STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01) :117-134

[2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[3]

Buiting AVM, 1995, 35 INT C ANT AG CHEM

[4] PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data [J].

Cosentino, Salvatore ;

Larsen, Mette Voldby ;

Aarestrup, Frank Moller ;

Lund, Ole .

PLOS ONE, 2013, 8 (10)

[5] Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer [J].

Doughty, Emma L. ;

Sergeant, Martin J. ;

Adetifa, Ifedayo ;

Antonio, Martin ;

Pallen, Mark J. .

PEERJ, 2014, 2

[6] MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].

Edgar, RC .

NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797

[7] Use of shell-vial cell culture assay for isolation of bacteria from clinical specimens: 13 Years of experience [J].

Gouriet, F ;

Fenollar, F ;

Patrice, JY ;

Drancourt, M ;

Raoult, D .

JOURNAL OF CLINICAL MICROBIOLOGY, 2005, 43 (10) :4993-5002

[8] "Mycobacterium tilburgii" Infection in Two Immunocompromised Children: Importance of Molecular Tools in Culture-Negative Mycobacterial Disease Diagnosis [J].

Hartwig, Nico G. ;

Warris, Adilia ;

van de Vosse, Esther ;

van der Zanden, Adri G. M. ;

Schulin-Casonato, Tanja ;

van Ingen, Jakko ;

van Hest, Rob .

JOURNAL OF CLINICAL MICROBIOLOGY, 2011, 49 (12) :4409-4411

[9] Functional Immune Reconstitution by Interleukin-2 Adjunctive Therapy for HIV/Mycobacterial Co-infection [J].

Heyckendorf, Jan ;

Aries, Sven Philip ;

Greinert, Ulf ;

Richter, Elvira ;

Schultz, Holger ;

Lange, Christoph .

EMERGING INFECTIOUS DISEASES, 2015, 21 (09) :1685-1687

[10] CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database [J].

Jia, Baofeng ;

Raphenya, Amogelang R. ;

Alcock, Brian ;

Waglechner, Nicholas ;

Guo, Peiyao ;

Tsang, Kara K. ;

Lago, Briony A. ;

Dave, Biren M. ;

Pereira, Sheldon ;

Sharma, Arjun N. ;

Doshi, Sachin ;

Courtot, Melanie ;

Lo, Raymond ;

Williams, Laura E. ;

Frye, Jonathan G. ;

Elsayegh, Tariq ;

Sardar, Daim ;

Westman, Erin L. ;

Pawlowski, Andrew C. ;

Johnson, Timothy A. ;

Brinkman, Fiona S. L. ;

Wright, Gerard D. ;

McArthur, Andrew G. .

NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) :D566-D573

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