Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI

被引：351

作者：

Ciufo, Stacy ^{[1
]}

Kannan, Sivakumar ^{[1
]}

Sharma, Shobha ^{[1
]}

Badretdin, Azat ^{[1
]}

Clark, Karen ^{[1
]}

Turner, Sean ^{[1
]}

Brover, Slava ^{[1
]}

Schoch, Conrad L. ^{[1
]}

Kimchi, Avi ^{[1
]}

DiCuccio, Michael ^{[1
]}

机构：

[1] NIH, Natl Ctr Biotechnol Informat, 9600 Rockville Pike, Bethesda, MD 20892 USA

来源：

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 2018年 / 68卷 / 07期

基金：

美国国家卫生研究院;

关键词：

taxonomy; GenBank; RefSeq; type strains; SPECIES DEFINITION; DELINEATION; BACTERIAL; DATABASE;

D O I：

10.1099/ijsem.0.002809

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Average nucleotide identity analysis is a useful tool to verify taxonomic identities in prokaryotic genomes, for both complete and draft assemblies. Using optimum threshold ranges appropriate for different prokaryotic taxa, we have reviewed all prokaryotic genome assemblies in GenBank with regard to their taxonomic identity. We present the methods used to make such comparisons, the current status of GenBank verifications, and recent developments in confirming species assignments in new genome submissions.

引用

页码：2386 / 2392

页数：7

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