The complete plastid genome of Ruppia brevipedunculata Shuo Yu and den Hartog

被引：4

作者：

Yu, Shuo ^{[1
]}

Li, Xiaojuan ^{[2
,3
]}

Jiang, Kai ^{[4
,5
]}

Shi, Miaomiao ^{[2
,6
]}

机构：

[1] Minist Nat Resources, Fourth Inst Oceanog, Beihai, Peoples R China

[2] Chinese Acad Sci, South China Bot Garden, Key Lab Plant Resources Conservat & Sustainable U, 723 Xingke Rd, Guangzhou 510650, Peoples R China

[3] Univ Chinese Acad Sci, Coll Life Sci, Beijing, Peoples R China

[4] Chinese Acad Sci, Shanghai Chenshan Plant Sci Res Ctr, Chenshan Bot Garden, Shanghai, Peoples R China

[5] East China Normal Univ, Shanghai Key Lab Urban Ecol Proc & Ecorestorat, Sch Ecol & Environm Sci, Shanghai, Peoples R China

[6] Chinese Acad Sci, Core Bot Gardens, Ctr Conservat Biol, Guangzhou, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 01期

基金：

中国国家自然科学基金;

关键词：

Ruppia brevipedunculata; Illumina sequencing; plastid genome; phylogenetic relationship;

D O I：

10.1080/23802359.2019.1704653

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The taxonomy of Ruppia has long been confused due to its high plasticity in morphology. In this study, the complete plastid genome sequence of Ruppia brevipedunculata was successfully sequenced by the technology of Illumina. The whole plastid genome length was 158,943 bp and contained a typical quadripartite structure including one large single copy (LSC) region (88,857 bp), one small single copy (SSC) region (19,130bp) and a pair of inverted repeats (IR) regions (25,478bp). The GC content of this genome was 35.8%. The whole genome contained 132 genes including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that R. brevipedunculata and R. sinensis formed a distinct clade separated from Potamogeton perfoliatus.

引用

页码：474 / 475

页数：2

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