Continuous immunotypes describe human immune variation and predict diverse responses

被引:87
作者
Kaczorowski, Kevin J. [1 ,2 ,3 ]
Shekhar, Karthik [4 ]
Nkulikiyimfura, Dieudonne [5 ]
Dekker, Cornelia L. [6 ]
Maecker, Holden [7 ]
Davis, Mark M. [7 ,8 ,9 ]
Chakraborty, Arup K. [1 ,2 ,3 ,10 ,11 ]
Brodin, Petter [5 ,12 ]
机构
[1] Ragon Inst Massachusetts Gen Hosp Massachusetts I, Cambridge, MA 02139 USA
[2] MIT, Dept Chem Engn, Cambridge, MA 02139 USA
[3] MIT, Inst Med Engn & Sci, 77 Massachusetts Ave, Cambridge, MA 02139 USA
[4] Broad Inst Harvard Univ & Massachusetts Inst Tech, Klarman Cell Observ, Cambridge, MA 02142 USA
[5] Karolinska Inst, Dept Med, Sci Life Lab, S-17177 Solna, Sweden
[6] Stanford Univ, Sch Med, Dept Pediat, Stanford, CA 94304 USA
[7] Stanford Univ, Sch Med, Dept Microbiol & Immunol, Stanford, CA 94304 USA
[8] Stanford Univ, Sch Med, Howard Hughes Med Inst, Stanford, CA 94304 USA
[9] Stanford Univ, Sch Med, Inst Immun Transplantat & Infect, Stanford, CA 94304 USA
[10] MIT, Dept Phys, Cambridge, MA 02139 USA
[11] MIT, Dept Chem, Cambridge, MA 02139 USA
[12] Karolinska Univ Hosp, Dept Neonatol, S-17176 Stockholm, Sweden
基金
瑞典研究理事会; 欧洲研究理事会;
关键词
human immune variation; immune cell composition; systems immunology; aging; CYTOMEGALOVIRUS; VACCINATION; SYSTEM; RATIO; NEUTROPENIA; EXPRESSION; INFLUENZA; FUTURE; CMV; AGE;
D O I
10.1073/pnas.1705065114
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The immune system consists of many specialized cell populations that communicate with each other to achieve systemic immune responses. Our analyses of various measured immune cell population frequencies in healthy humans and their responses to diverse stimuli show that human immune variation is continuous in nature, rather than characterized by discrete groups of similar individuals. We show that the same three key combinations of immune cell population frequencies can define an individual's immunotype and predict a diverse set of functional responses to cytokine stimulation. We find that, even though interindividual variations in specific cell population frequencies can be large, unrelated individuals of younger age have more homogeneous immunotypes than older individuals. Across age groups, cytomegalovirus seropositive individuals displayed immunotypes characteristic of older individuals. The conceptual framework for defining immunotypes suggested by our results could guide the development of better therapies that appropriately modulate collective immunotypes, rather than individual immune components.
引用
收藏
页码:E6097 / E6106
页数:10
相关论文
共 45 条
[21]   The future of cancer treatment: immunomodulation, CARs and combination immunotherapy [J].
Khalil, Danny N. ;
Smith, Eric L. ;
Brentjens, Renier J. ;
Wolchok, Jedd D. .
NATURE REVIEWS CLINICAL ONCOLOGY, 2016, 13 (05) :273-290
[22]   Role of cytomegalovirus in the T cell changes seen in elderly individuals [J].
Looney, RJ ;
Falsey, A ;
Campbell, D ;
Torres, A ;
Kolassa, J ;
Brower, C ;
McCann, R ;
Menegus, N ;
McCormick, K ;
Frampton, M ;
Hall, W ;
Abraham, GN .
CLINICAL IMMUNOLOGY, 1999, 90 (02) :213-219
[23]   Standardizing immunophenotyping for the Human Immunology Project [J].
Maecker, Holden T. ;
McCoy, J. Philip ;
Nussenblatt, Robert .
NATURE REVIEWS IMMUNOLOGY, 2012, 12 (03) :191-200
[24]  
Murphy K., 2012, Janeways immunobiology, V8
[25]   Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures [J].
Nakaya, Helder I. ;
Hagan, Thomas ;
Duraisingham, Sai S. ;
Lee, Eva K. ;
Kwissa, Marcin ;
Rouphael, Nadine ;
Frasca, Daniela ;
Gersten, Merril ;
Mehta, Aneesh K. ;
Gaujoux, Renaud ;
Li, Gui-Mei ;
Gupta, Shakti ;
Ahmed, Rafi ;
Mulligan, Mark J. ;
Shen-Orr, Shai ;
Blomberg, Bonnie B. ;
Subramaniam, Shankar ;
Pulendran, Bali .
IMMUNITY, 2015, 43 (06) :1186-1198
[26]   Systems biology of vaccination for seasonal influenza in humans [J].
Nakaya, Helder I. ;
Wrammert, Jens ;
Lee, Eva K. ;
Racioppi, Luigi ;
Marie-Kunze, Stephanie ;
Haining, W. Nicholas ;
Means, Anthony R. ;
Kasturi, Sudhir P. ;
Khan, Nooruddin ;
Li, Gui-Mei ;
McCausland, Megan ;
Kanchan, Vibhu ;
Kokko, Kenneth E. ;
Li, Shuzhao ;
Elbein, Rivka ;
Mehta, Aneesh K. ;
Aderem, Alan ;
Subbarao, Kanta ;
Ahmed, Rafi ;
Pulendran, Bali .
NATURE IMMUNOLOGY, 2011, 12 (08) :786-U149
[27]   Genetic Variants Regulating Immune Cell Levels in Health and Disease [J].
Orru, Valeria ;
Steri, Maristella ;
Sole, Gabriella ;
Sidore, Carlo ;
Virdis, Francesca ;
Dei, Mariano ;
Lai, Sandra ;
Zoledziewska, Magdalena ;
Busonero, Fabio ;
Mulas, Antonella ;
Floris, Matteo ;
Mentzen, Wieslawa I. ;
Urru, Silvana A. M. ;
Olla, Stefania ;
Marongiu, Michele ;
Piras, Maria G. ;
Lobina, Monia ;
Maschio, Andrea ;
Pitzalis, Maristella ;
Urru, Maria F. ;
Marcelli, Marco ;
Cusano, Roberto ;
Deidda, Francesca ;
Serra, Valentina ;
Oppo, Manuela ;
Pilu, Rosella ;
Reinier, Frederic ;
Berutti, Riccardo ;
Pireddu, Luca ;
Zara, Ilenia ;
Porcu, Eleonora ;
Kwong, Alan ;
Brennan, Christine ;
Tarrier, Brendan ;
Lyons, Robert ;
Kang, Hyun M. ;
Uzzau, Sergio ;
Atzeni, Rossano ;
Valentini, Maria ;
Firinu, Davide ;
Leoni, Lidia ;
Rotta, Gianluca ;
Naitza, Silvia ;
Angius, Andrea ;
Congia, Mauro ;
Whalen, Michael B. ;
Jones, Chris M. ;
Schlessinger, David ;
Abecasis, Goncalo R. ;
Fiorillo, Edoardo .
CELL, 2013, 155 (01) :242-256
[28]   Cytomegalovirus and human immunosenescence [J].
Pawelec, Graham ;
Derhovanessian, Evelyna ;
Larbi, Anis ;
Strindhall, Jan ;
Wikby, Anders .
REVIEWS IN MEDICAL VIROLOGY, 2009, 19 (01) :47-56
[29]   The impact of CMV infection on survival in older humans [J].
Pawelec, Graham ;
McElhaney, Janet E. ;
Aiello, Allison E. ;
Derhovanessian, Evelyna .
CURRENT OPINION IN IMMUNOLOGY, 2012, 24 (04) :507-511
[30]   Role of CMV in immune senescence [J].
Pawelec, Graham ;
Derhovanessian, Evelyna .
VIRUS RESEARCH, 2011, 157 (02) :175-179