DNA as a vehicle for the self-assembly model of computing

被引:18
|
作者
Conrad, M [1 ]
Zauner, KP [1 ]
机构
[1] Wayne State Univ, Dept Comp Sci, Detroit, MI 48202 USA
基金
美国国家科学基金会;
关键词
DNA computing; self-assembly; conformational dynamics; pattern recognition; molecular computing;
D O I
10.1016/S0303-2647(97)00062-2
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
A DNA version of the self-assembly model of computing, feasible using currently available laboratory techniques, is proposed. Input signals are coded into unmethylated and methylated oligonucleotides which then hybridize with a backbone that contains complementary sequences. Different input signal patterns are thus represented as DNA duplexes with distinctly different conformational dynamics, in particular different equilibria of B and Z DNA. The pattern classification activity of the system is mediated by the interactions that lead to the secondary structural organization. Circular dichroism may be used for readout. (C) 1998 Elsevier Science Ireland Ltd.
引用
收藏
页码:59 / 66
页数:8
相关论文
共 50 条
  • [31] Tailoring DNA Self-assembly to Build Hydrogels
    Jie Chen
    Ying Zhu
    Huajie Liu
    Lihua Wang
    Topics in Current Chemistry, 2020, 378
  • [32] DNA addition using linear self-assembly
    Zhao Jian
    Qian LuLu
    Liu Qiang
    Zhang ZhiZhou
    He Lin
    CHINESE SCIENCE BULLETIN, 2007, 52 (11): : 1462 - 1467
  • [33] Materials design by DNA programmed self-assembly
    Knorowski, C.
    Travesset, A.
    CURRENT OPINION IN SOLID STATE & MATERIALS SCIENCE, 2011, 15 (06) : 262 - 270
  • [34] Self-assembly of DNA on a gapped carbon nanotube
    Alfredo D. Bobadilla
    Jorge M. Seminario
    Journal of Molecular Modeling, 2012, 18 : 3291 - 3300
  • [35] Self-Assembly of DNA Nanostructures in Different Cations
    Rodriguez, Arlin
    Gandavadi, Dhanush
    Mathivanan, Johnsi
    Song, Tingjie
    Madhanagopal, Bharath Raj
    Talbot, Hannah
    Sheng, Jia
    Wang, Xing
    Chandrasekaran, Arun Richard
    SMALL, 2023, 19 (39)
  • [36] 3D DNA Self-Assembly Model for Graph Vertex Coloring
    Lin, Minqi
    Xu, Jin
    Zhang, Dafang
    Chen, Zhihua
    Zhang, Xuncai
    Cheng, Zhen
    Huang, Yufang
    Li, Yanbiao
    JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2010, 7 (01) : 246 - 253
  • [37] Arithmetic computation using self-assembly of DNA tiles: subtraction and division
    Zhang, Xuncai
    Wang, Yanfeng
    Chen, Zhihua
    Xu, Jin
    Cui, Guangzhao
    PROGRESS IN NATURAL SCIENCE-MATERIALS INTERNATIONAL, 2009, 19 (03) : 377 - 388
  • [38] Regulating DNA Self-assembly by DNA-Surface Interactions
    Liu, Longfei
    Li, Yulin
    Wang, Yong
    Zheng, Jianwei
    Mao, Chengde
    CHEMBIOCHEM, 2017, 18 (24) : 2404 - 2407
  • [40] Nucleic Acid Enzymes: The Fusion of Self-assembly and Conformational Computing
    Ramlan, Effirul I.
    Zauner, Klaus-Peter
    INTERNATIONAL JOURNAL OF UNCONVENTIONAL COMPUTING, 2009, 5 (02) : 165 - 189