Molecular and Metabolic Subtypes in Sporadic and Inherited Clear Cell Renal Cell Carcinoma

被引:12
作者
Czyzyk-Krzeska, Maria F. [1 ,2 ,3 ]
Landero Figueroa, Julio A. [3 ,4 ]
Gulati, Shuchi [5 ]
Cunningham, John T. [1 ]
Meller, Jarek [3 ,6 ,7 ,8 ,9 ]
ShamsaeI, Behrouz [8 ]
Vemuri, Bhargav [1 ]
Plas, David R. [1 ]
机构
[1] Univ Cincinnati, Dept Canc Biol, Cincinnati, OH 45267 USA
[2] Cincinnati Veteran Affairs Med Ctr, Dept Vet Affairs, Cincinnati, OH 45220 USA
[3] Univ Cincinnati, Coll Med, Dept Pharmacol & Syst Biol, Cincinnati, OH 45267 USA
[4] Univ Cincinnati, Dept Chem, Agilent Metall Ctr Amer, Cincinnati, OH 45221 USA
[5] Univ Cincinnati, Dept Med, Div Hematol & Oncol, Cincinnati, OH 45267 USA
[6] Univ Cincinnati, Dept Biomed Informat, Cincinnati, OH 45267 USA
[7] Cincinnati Childrens Hosp Med Ctr, Div Biomed Informat, Cincinnati, OH 45229 USA
[8] Univ Cincinnati, Dept Environm & Publ Hlth Sci, Div Biostat & Bioinformat, Cincinnati, OH 45267 USA
[9] Univ Cincinnati, Coll Engn & Appl Sci, Dept Elect Engn & Comp Sci, Cincinnati, OH 45221 USA
关键词
clear cell renal cell carcinoma; VHL; transcriptomics; proteomics; metabolomics; metallomics; precision medicine; C-MYC; KIDNEY CANCER; CYTOREDUCTIVE NEPHRECTOMY; REPLICATION STRESS; VHL; MTOR; HIF; PBRM1; EXPRESSION; COMBINATION;
D O I
10.3390/genes12030388
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The promise of personalized medicine is a therapeutic advance where tumor signatures obtained from different omics platforms, such as genomics, transcriptomics, proteomics, and metabolomics, in addition to environmental factors including metals and metalloids, are used to guide the treatments. Clear cell renal carcinoma (ccRCC), the most common type of kidney cancer, can be sporadic (frequently) or genetic (rare), both characterized by loss of the von Hippel-Lindau (VHL) gene that controls hypoxia inducible factors. Recently, several genomic subtypes were identified with different prognoses. Transcriptomics, proteomics, metabolomics and metallomic data converge on altered metabolism as the principal feature of the disease. However, in view of multiple biochemical alterations and high level of tumor heterogeneity, identification of clearly defined subtypes is necessary for further improvement of treatments. In the future, single-cell combined multi-omics approaches will be the next generation of analyses gaining deeper insights into ccRCC progression and allowing for design of specific signatures, with better prognostic/predictive clinical applications.
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页数:17
相关论文
共 116 条
[91]   From correlation to causation: analysis of metabolomics data using systems biology approaches [J].
Rosato, Antonio ;
Tenori, Leonardo ;
Cascante, Marta ;
De Atauri Carulla, Pedro Ramon ;
dos Santos, Vitor A. P. Martins ;
Saccenti, Edoardo .
METABOLOMICS, 2018, 14 (04)
[92]   Transcriptomic signatures related to the obesity paradox in patients with clear cell renal cell carcinoma: a cohort study [J].
Sanchez, Alejandro ;
Furberg, Helena ;
Kuo, Fengshen ;
Vuong, Lynda ;
Ged, Yasser ;
Patil, Sujata ;
Ostrovnaya, Irina ;
Petruzella, Stacey ;
Reising, Albert ;
Patel, Parul ;
Mano, Roy ;
Coleman, Jonathan ;
Russo, Paul ;
Liu, Catherine H. ;
Dannenberg, Andrew J. ;
Chan, Timothy A. ;
Motzer, Robert ;
Voss, Martin H. ;
Hakimi, A. Ari .
LANCET ONCOLOGY, 2020, 21 (02) :283-293
[93]   Integrated molecular analysis of clear-cell renal cell carcinoma [J].
Sato, Yusuke ;
Yoshizato, Tetsuichi ;
Shiraishi, Yuichi ;
Maekawa, Shigekatsu ;
Okuno, Yusuke ;
Kamura, Takumi ;
Shimamura, Teppei ;
Sato-Otsubo, Aiko ;
Nagae, Genta ;
Suzuki, Hiromichi ;
Nagata, Yasunobu ;
Yoshida, Kenichi ;
Kon, Ayana ;
Suzuki, Yutaka ;
Chiba, Kenichi ;
Tanaka, Hiroko ;
Niida, Atsushi ;
Fujimoto, Akihiro ;
Tsunoda, Tatsuhiko ;
Morikawa, Teppei ;
Maeda, Daichi ;
Kume, Haruki ;
Sugano, Sumio ;
Fukayama, Masashi ;
Aburatani, Hiroyuki ;
Sanada, Masashi ;
Miyano, Satoru ;
Homma, Yukio ;
Ogawa, Seishi .
NATURE GENETICS, 2013, 45 (08) :860-U191
[94]  
Saxton RA, 2017, CELL, V168, P960, DOI [10.1016/j.cell.2017.02.004, 10.1016/j.cell.2017.03.035]
[95]   HIF-1 mediates the Warburg effect in clear cell renal carcinoma [J].
Semenza, Gregg L. .
JOURNAL OF BIOENERGETICS AND BIOMEMBRANES, 2007, 39 (03) :231-234
[96]   Genetic and Functional Studies Implicate HIF1α as a 14q Kidney Cancer Suppressor Gene [J].
Shen, Chuan ;
Beroukhim, Rameen ;
Schumacher, Steven E. ;
Zhou, Jing ;
Chang, Michelle ;
Signoretti, Sabina ;
Kaelin, William G., Jr. .
CANCER DISCOVERY, 2011, 1 (03) :222-235
[97]   Recent Advances in the Development of Fatty Acid Synthase Inhibitors as Anticancer Agents [J].
Singh, Shailendra ;
Karthikeyan, Chandrabose ;
Moorthy, N. S. Hari Narayana .
MINI-REVIEWS IN MEDICINAL CHEMISTRY, 2020, 20 (18) :1820-1837
[98]   On the analysis and interpretation of correlations in metabolomic data [J].
Steuer, Ralf .
BRIEFINGS IN BIOINFORMATICS, 2006, 7 (02) :151-158
[99]   Requirement for ribosomal protein S6 kinase 1 to mediate glycolysis and apoptosis resistance induced by Pten deficiency [J].
Tandon, Preeti ;
Gallo, Catherine A. ;
Khatri, Shikha ;
Barger, Jennifer F. ;
Yepiskoposyan, Hasmik ;
Plas, David R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (06) :2361-2365
[100]   Phase 1 study of glutaminase (GLS) inhibitor CB-839 combined with either everolimus (E) or cabozantinib (Cabo) in patients (pts) with clear cell (cc) and papillary (pap) metastatic renal cell cancer (mRCC). [J].
Tannir, Nizar M. ;
Fan, Alice C. ;
Lee, Richard J. ;
Carthon, Bradley Curtis ;
Iliopoulos, Othon ;
Mier, James Walter ;
Patel, Manish R. ;
Meric-Bernstam, Funda ;
DeMichele, Angela ;
Voss, Martin Henner ;
Harding, James J. ;
Srinivasan, Ramaprasad ;
Shapiro, Geoffrey ;
Telli, Melinda L. ;
Munster, Pamela N. ;
Carvajal, Richard D. ;
Jenkins, Yonchu ;
Whiting, Samuel H. ;
Bendell, Johanna C. ;
Bauer, Todd Michael .
JOURNAL OF CLINICAL ONCOLOGY, 2018, 36 (06)