Unlocking historical phenotypic data from an ex situ collection to enhance the informed utilization of genetic resources of barley (Hordeum sp.)

被引:16
作者
Gonzalez, Maria Y. [1 ]
Philipp, Norman [1 ]
Schulthess, Albert W. [1 ]
Weise, Stephan [2 ]
Zhao, Yusheng [1 ]
Boerner, Andreas [2 ]
Oppermann, Markus [2 ]
Graner, Andreas [2 ]
Reif, Jochen C. [1 ]
机构
[1] Leibniz Inst Plant Genet & Crop Plant Res IPK, Dept Breeding Res, D-06466 Gatersleben, Germany
[2] Leibniz Inst Plant Genet & Crop Plant Res IPK, Dept Genebank, D-06466 Gatersleben, Germany
关键词
SINGLE-CROSS PERFORMANCE; GENOMIC SELECTION; VULGARE L; LINKAGE DISEQUILIBRIUM; POPULATION-STRUCTURE; CULTIVATED BARLEY; SPRING BARLEY; PREDICTION; WHEAT; IMPROVEMENT;
D O I
10.1007/s00122-018-3129-z
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Key message Historical data generated during seed regeneration are valuable to populate a bio-digital resource center for barley ( Hordeum sp.). Precise estimates of trait performance of genetic resources are considered as an intellectually challenging, complex, costly and time-consuming step needed to exploit the phenotypic and genetic diversity maintained in genebanks for breeding and research. Using barley (Hordeum sp.) as a model, we examine strategies to tap into historical data available from regeneration trials. This is a first step toward extending the Federal ex situ Genebank into a bio-digital resource center facilitating an informed choice of barley accessions for research and breeding. Our study is based on historical data of seven decades collected for flowering time, plant height, and thousand grain weight during the regeneration of 12,872 spring and winter barley accessions. Linear mixed models were implemented in conjunction with routines for assessment of data quality. A resampling study highlights the potential risk of biased estimates in second-order statistics when grouping accessions for regeneration according to the year of collection or geographic origin. Based on rigorous quality assessment, we obtained high heritability estimates for the traits under consideration exceeding 0.8. Thus, the best linear unbiased estimations for the three traits are a valuable source to populate a bio-digital resource center for the IPK barley collection. The proposed strategy to leverage historical data from regeneration trials is not crop specific and can be used as a blueprint for other ex situ collections.
引用
收藏
页码:2009 / 2019
页数:11
相关论文
共 60 条
[31]   NGS technologies for analyzing germplasm diversity in genebanks* [J].
Kilian, Benjamin ;
Graner, Andreas .
BRIEFINGS IN FUNCTIONAL GENOMICS, 2012, 11 (01) :38-50
[32]   Towards recommendations for metadata and data handling in plant phenotyping [J].
Krajewski, Pawel ;
Chen, Dijun ;
Cwiek, Hanna ;
van Dijk, Aalt D. J. ;
Fiorani, Fabio ;
Kersey, Paul ;
Klukas, Christian ;
Lange, Matthias ;
Markiewicz, Augustyn ;
Nap, Jan Peter ;
van Oeveren, Jan ;
Pommier, Cyril ;
Scholz, Uwe ;
van Schriek, Marco ;
Usadel, Bjoern ;
Weise, Stephan .
JOURNAL OF EXPERIMENTAL BOTANY, 2015, 66 (18) :5417-5427
[33]   Genetic and non-genetic long-term trends of 12 different crops in German official variety performance trials and on-farm yield trends [J].
Laidig, Friedrich ;
Piepho, Hans-Peter ;
Drobek, Thomas ;
Meyer, Uwe .
THEORETICAL AND APPLIED GENETICS, 2014, 127 (12) :2599-2617
[34]   GENOMIC SELECTION IN PLANT BREEDING: KNOWLEDGE AND PROSPECTS [J].
Lorenz, Aaron J. ;
Chao, Shiaoman ;
Asoro, Franco G. ;
Heffner, Elliot L. ;
Hayashi, Takeshi ;
Iwata, Hiroyoshi ;
Smith, Kevin P. ;
Sorrells, Mark E. ;
Jannink, Jean-Luc .
ADVANCES IN AGRONOMY, VOL 110, 2011, 110 :77-123
[35]   Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.) [J].
Malysheva-Otto, LV ;
Ganal, MW ;
Röder, MS .
BMC GENETICS, 2006, 7 (1)
[36]   Feeding the future [J].
McCouch, Susan ;
Baute, Gregory J. ;
Bradeen, James ;
Bramel, Paula ;
Bretting, Peter K. ;
Buckler, Edward ;
Burke, John M. ;
Charest, David ;
Cloutier, Sylvie ;
Cole, Glenn ;
Dempewolf, Hannes ;
Dingkuhn, Michael ;
Feuillet, Catherine ;
Gepts, Paul ;
Grattapaglia, Dario ;
Guarino, Luigi ;
Jackson, Scott ;
Knapp, Sandra ;
Langridge, Peter ;
Lawton-Rauh, Amy ;
Lijua, Qui ;
Lusty, Charlotte ;
Michael, Todd ;
Myles, Sean ;
Naito, Ken ;
Nelson, Randall L. ;
Pontarollo, Reno ;
Richards, Christopher M. ;
Rieseberg, Loren ;
Ross-Ibarra, Jeffrey ;
Rounsley, Steve ;
Hamilton, Ruaraidh Sackville ;
Schurr, Ulrich ;
Stein, Nils ;
Tomooka, Norihiko ;
van der Knaap, Esther ;
van Tassel, David ;
Toll, Jane ;
Valls, Jose ;
Varshney, Rajeev K. ;
Ward, Judson ;
Waugh, Robbie ;
Wenzl, Peter ;
Zamir, Daniel .
NATURE, 2013, 499 (7456) :23-+
[37]  
McKevith B., 2004, Nutrition Bulletin, V29, P111, DOI 10.1111/j.1467-3010.2004.00418.x
[38]  
Meuwissen THE, 2001, GENETICS, V157, P1819
[39]   Unlocking Diversity in Germplasm Collections via Genomic Selection: A Case Study Based on Quantitative Adult Plant Resistance to Stripe Rust in Spring Wheat [J].
Muleta, Kebede T. ;
Bulli, Peter ;
Zhang, Zhiwu ;
Chen, Xianming ;
Pumphrey, Michael .
PLANT GENOME, 2017, 10 (03)
[40]   RECOVERY OF INTER-BLOCK INFORMATION WHEN BLOCK SIZES ARE UNEQUAL [J].
PATTERSON, HD ;
THOMPSON, R .
BIOMETRIKA, 1971, 58 (03) :545-+