The structures of the anti-tuberculosis antibiotics viomycin and capreomycin bound to the 70S ribosome

被引:144
作者
Stanley, Robin E. [1 ]
Blaha, Gregor [1 ]
Grodzicki, Robert L. [1 ,2 ]
Strickler, Michael D. [1 ,2 ]
Steitz, Thomas A. [1 ,2 ,3 ]
机构
[1] Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA
[2] Yale Univ, Howard Hughes Med Inst, New Haven, CT 06511 USA
[3] Yale Univ, Dept Chem, New Haven, CT 06511 USA
基金
美国国家卫生研究院;
关键词
TRANSFER-RNA; TRANSLATION TERMINATION; INTERMEDIATE STATES; BACTERIAL RIBOSOME; CRYSTAL-STRUCTURE; MESSENGER-RNA; TRANSLOCATION; INHIBITION; INSIGHTS; SUBUNIT;
D O I
10.1038/nsmb.1755
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Viomycin and capreomycin belong to the tuberactinomycin family of antibiotics, which are among the most effective antibiotics against multidrug-resistant tuberculosis. Here we present two crystal structures of the 70S S ribosome in complex with three tRNAs and bound to either viomycin or capreomycin at 3.3- and 3.5-angstrom resolution, respectively. Both antibiotics bind to the same site on the ribosome, which lies at the interface between helix 44 of the small ribosomal subunit and helix 69 of the large ribosomal subunit. T The structures of these complexes suggest that the tuberactinomycins inhibit translocation by stabilizing the tRNA in the A site in the pretranslocation state. In addition, these structures show that the tuberactinomycins bind adjacent to the binding sites for the paromomycin and hygromycin B antibiotics, which may enable the development of new derivatives of tuberactinomycins that are effective against drug-resistant strains.
引用
收藏
页码:289 / U48
页数:6
相关论文
共 49 条
  • [1] PHENIX:: building new software for automated crystallographic structure determination
    Adams, PD
    Grosse-Kunstleve, RW
    Hung, LW
    Ioerger, TR
    McCoy, AJ
    Moriarty, NW
    Read, RJ
    Sacchettini, JC
    Sauter, NK
    Terwilliger, TC
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 : 1948 - 1954
  • [2] Visualization of the Hybrid State of tRNA Binding Promoted by Spontaneous Ratcheting of the Ribosome
    Agirrezabala, Xabier
    Lei, Jianlin
    Brunelle, Julie L.
    Ortiz-Meoz, Rodrigo F.
    Green, Rachel
    Frank, Joachim
    [J]. MOLECULAR CELL, 2008, 32 (02) : 190 - 197
  • [3] Deletion of a conserved, central ribosomal intersubunit RNA bridge
    Ali, Iraj K.
    Lancaster, Laura
    Feinberg, Jason
    Joseph, Simpson
    Noller, Harry F.
    [J]. MOLECULAR CELL, 2006, 23 (06) : 865 - 874
  • [4] Structural basis for hygromycin B inhibition of protein biosynthesis
    Borovinskaya, Maria A.
    Shoji, Shinichiro
    Fredrick, Kurt
    Cate, Jamie H. D.
    [J]. RNA, 2008, 14 (08) : 1590 - 1599
  • [5] Structural basis for aminoglycoside inhibition of bacterial ribosome recycling
    Borovinskaya, Maria A.
    Pai, Raj D.
    Zhang, Wen
    Schuwirth, Barbara S.
    Holton, James M.
    Hirokawa, Go
    Kaji, Hideko
    Kaji, Akira
    Cate, Jamie H. Doudna
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (08) : 727 - 732
  • [6] Version 1.2 of the Crystallography and NMR system
    Brunger, Axel T.
    [J]. NATURE PROTOCOLS, 2007, 2 (11) : 2728 - 2733
  • [7] Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    Carter, AP
    Clemons, WM
    Brodersen, DE
    Morgan-Warren, RJ
    Wimberly, BT
    Ramakrishnan, V
    [J]. NATURE, 2000, 407 (6802) : 340 - 348
  • [8] Spontaneous intersubunit rotation in single ribosomes
    Cornish, Peter V.
    Ermolenko, Drnitri N.
    Noller, Harry F.
    Ha, Taekjip
    [J]. MOLECULAR CELL, 2008, 30 (05) : 578 - 588
  • [9] Coot:: model-building tools for molecular graphics
    Emsley, P
    Cowtan, K
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 : 2126 - 2132
  • [10] The antibiotic viomycin traps the ribosome in an intermediate state of translocation
    Ermolenko, Dmitri N.
    Spiegel, P. Clint
    Majumdar, Zigurts K.
    Hickerson, Robyn P.
    Clegg, Robert M.
    Noller, Harry F.
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (06) : 493 - 497