The complete chloroplast genome sequence of the medicinal plant, Angelica gigas (Apiaceae)

被引:3
作者
Choi, Sun A. [1 ]
Kim, Yeji [1 ]
Kim, Kyu-Yeob [1 ]
Kim, Jong Hwan [1 ]
Seong, Rack Seon [1 ]
机构
[1] Minist Food & Drug Safety, Natl Inst Food & Drug Safety Evaluat, Herbal Med Res Div, Cheongju 363700, Chungcheongbuk, South Korea
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2016年 / 1卷 / 01期
关键词
Angelica gigas; Apiaceae; chloroplast; genome sequence; medicinal plant;
D O I
10.1080/23802359.2016.1166077
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete chloroplast genome sequence of Angelica gigas, a traditional herbal plant used in treating diseases, was obtained by de novo assembly using illumina sequencing data (Illumina Inc., San Diego, CA). The circular molecule of the genome was constructed of four parts, with a size of 146,916 bp in total - a large single copy (LSC) region of 93,118 bp, a small single copy (SSC) region of 17,582 bp and two inverted repeat (IRa and IRb) regions of 18,108 bp each. There were a total of 113 annotated genes, including 80 protein-coding genes, 29 tRNA genes and four rRNA genes. The phylogenetic result acquired through maximum parsimony analysis showed that A. gigas is closely related with A. decursiva and Seseli montanum.
引用
收藏
页码:280 / 281
页数:2
相关论文
共 9 条
[1]  
Ahn KS., 1996, KOR J PHARMACOGN, V27, P254
[2]  
[Anonymous], 2010, PHARMACOPOEIA PEOPLE
[3]   MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform [J].
Katoh, K ;
Misawa, K ;
Kuma, K ;
Miyata, T .
NUCLEIC ACIDS RESEARCH, 2002, 30 (14) :3059-3066
[4]  
Korea Food and Drug Administration, 2013, 10 KOR PHARM KP
[5]   OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes [J].
Lohse, Marc ;
Drechsel, Oliver ;
Bock, Ralph .
CURRENT GENETICS, 2007, 52 (5-6) :267-274
[6]  
Tamura K, 2013, MOL BIOL EVOL, V30, P2725, DOI [10.1093/molbev/mst197, 10.1093/molbev/msr121]
[7]   Automatic annotation of organellar genomes with DOGMA [J].
Wyman, SK ;
Jansen, RK ;
Boore, JL .
BIOINFORMATICS, 2004, 20 (17) :3252-3255
[8]  
Yoon Thesook, 2007, Journal of Applied Biological Chemistry, V50, P264
[9]  
Zehui P, 2005, ANGELICA FLORA CHINA, V14, P165