Clinical lipidomics-A community-driven roadmap to translate research into clinical applications

被引:19
作者
Vvedenskaya, Olga [1 ,2 ]
Holcapek, Michal [3 ]
Vogeser, Michael [4 ]
Ekroos, Kim [5 ]
Meikle, Peter J. [6 ]
Bendt, Anne K. [7 ]
机构
[1] Max Planck Inst Mol Cell Biol & Genet, Dresden, Germany
[2] Spectroswiss Sarl, Lausanne, Switzerland
[3] Univ Pardubice, Fac Chem Technol, Dept Analyt Chem, Pardubice, Czech Republic
[4] Munich Univ Clin, Inst Lab Med, Munich, Germany
[5] Lipid Consulting Ltd, Espoo, Finland
[6] Baker Heart & Diabet Inst, Melbourne, Vic, Australia
[7] Natl Univ Singapore, Life Sci Inst, Singapore Lipid Incubator SLING, Singapore, Singapore
来源
JOURNAL OF MASS SPECTROMETRY AND ADVANCES IN THE CLINICAL LAB | 2022年 / 24卷
关键词
Lipidomics; Translation; Harmonization; Standardization; Validation;
D O I
10.1016/j.jmsacl.2022.02.002
中图分类号
R446 [实验室诊断]; R-33 [实验医学、医学实验];
学科分类号
1001 ;
摘要
Lipid metabolites, beyond triglycerides and cholesterol, have been shown to have vast potential for applications in clinical applications, with substantial societal and economical value. To successfully evolve from the current research-grade methods to assays suitable for routine clinical applications, a harmonization - if not standardization - of these mass spectrometry-based workflows is necessary. Input on clinical needs and technological capabilities must be obtained from all relevant stakeholders, including wet lab scientists, informaticians and data scientists, manufacturers, and medical professionals. In order to build bridges between this diverse group of professionals, the International Lipidomics Society and its Clinical Lipidomics Interest Group were created. This opinion article is intended to provide an overview of international efforts to tackle the issues of workflow harmonization, and to serve as an open invitation for others to join this growing community.
引用
收藏
页码:1 / 4
页数:4
相关论文
共 27 条
  • [1] Host/Malassezia Interaction: A Quantitative, Non-Invasive Method Profiling Oxylipin Production Associates Human Skin Eicosanoids with Malassezia
    Ambaw, Yohannes Abere
    Pagac, Martin P.
    Irudayaswamy, Antony S.
    Raida, Manfred
    Bendt, Anne K.
    Torta, Federico T.
    Wenk, Markus R.
    Dawson, Thomas L., Jr.
    [J]. METABOLITES, 2021, 11 (10)
  • [2] Nontargeted lipidomics of novel human plasma reference materials: hypertriglyceridemic, diabetic, and African-American
    Aristizabal-Henao, Juan J.
    Jones, Christina M.
    Lippa, Katrice A.
    Bowden, John A.
    [J]. ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2020, 412 (27) : 7373 - 7380
  • [3] Bitenc M., 2018, METHODS SYSTEMS META
  • [4] Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma
    Bowden, John A.
    Heckert, Alan
    Ulmer, Candice Z.
    Jones, Christina M.
    Koelmel, Jeremy P.
    Abdullah, Laila
    Ahonen, Linda
    Alnouti, Yazen
    Armando, Aaron M.
    Asara, John M.
    Bamba, Takeshi
    Barr, John R.
    Bergquist, Jonas
    Borchers, Christoph H.
    Brandsma, Joost
    Breitkopf, Susanne B.
    Cajka, Tomas
    Cazenave-Gassiot, Amaury
    Checa, Antonio
    Cinel, Michelle A.
    Colas, Romain A.
    Cremers, Serge
    Dennis, Edward A.
    Evans, James E.
    Fauland, Alexander
    Fiehn, Oliver
    Gardner, Michael S.
    Garrett, Timothy J.
    Gotlinger, Katherine H.
    Han, Jun
    Huang, Yingying
    Neo, Aveline Huipeng
    Hyotylainen, Tuulia
    Izumi, Yoshihiro
    Jiang, Hongfeng
    Jiang, Houli
    Jiang, Jiang
    Kachman, Maureen
    Kiyonami, Reiko
    Klavins, Kristaps
    Klose, Christian
    Kofeler, Harald C.
    Kolmert, Johan
    Koal, Therese
    Koster, Grielof
    Kuklenyik, Zsuzsanna
    Kurland, Irwin J.
    Leadley, Michael
    Lin, Karen
    Maddipati, Krishna Rao
    [J]. JOURNAL OF LIPID RESEARCH, 2017, 58 (12) : 2275 - 2288
  • [5] MS-based lipidomics of human blood plasma: a community-initiated position paper to develop accepted guidelines
    Burla, Bo
    Arita, Makoto
    Arita, Masanori
    Bendt, Anne K.
    Cazenave-Gassiot, Amaury
    Dennis, Edward A.
    Ekroos, Kim
    Han, Xianlin
    Ikeda, Kazutaka
    Liebisch, Gerhard
    Lin, Michelle K.
    Loh, Tze Ping
    Meikle, Peter J.
    Oresic, Matej
    Quehenberger, Oswald
    Shevchenko, Andrej
    Torta, Federico
    Wakelam, Michael J. O.
    Wheelock, Craig E.
    Wenk, Markus R.
    [J]. JOURNAL OF LIPID RESEARCH, 2018, 59 (10) : 2001 - 2017
  • [6] Development and variation of a ceramide- and phospholipid-based cardiovascular risk estimation score for coronary artery disease patients
    Hilvo, Mika
    Meikle, Peter J.
    Pedersen, Eva Ringdal
    Tell, Grethe S.
    Dhar, Indu
    Brenner, Hermann
    Schoettker, Ben
    Laaperi, Mitja
    Kauhanen, Dimple
    Koistinen, Kaisa M.
    Jylha, Antti
    Huynh, Kevin
    Mellett, Natalie A.
    Tonkin, Andrew M.
    Sullivan, David R.
    Simes, John
    Nestel, Paul
    Koenig, Wolfgang
    Rothenbacher, Dietrich
    Nygard, Ottar
    Laaksonen, Reijo
    [J]. EUROPEAN HEART JOURNAL, 2020, 41 (03) : 371 - 380
  • [7] Functional lipidomics of vascular endothelial cells in response to laminar shear stress
    Hirata, Tsuyoshi
    Yamamoto, Kimiko
    Ikeda, Kazutaka
    Arita, Makoto
    [J]. FASEB JOURNAL, 2021, 35 (02)
  • [8] Holcapek M., 2020, A method of diagnosing pancreatic cancer based on lipidomic analysis of a body fluid, Patent No. [EP3514545B1, 3514545]
  • [9] Concordant peripheral lipidome signatures in two large clinical studies of Alzheimer's disease
    Huynh, Kevin
    Lim, Wei Ling Florence
    Giles, Corey
    Jayawardana, Kaushala S.
    Salim, Agus
    Mellett, Natalie A.
    Smith, Adam Alexander T.
    Olshansky, Gavriel
    Drew, Brian G.
    Chatterjee, Pratishtha
    Martins, Ian
    Laws, Simon M.
    Bush, Ashley I.
    Rowe, Christopher C.
    Villemagne, Victor L.
    Ames, David
    Masters, Colin L.
    Arnold, Matthias
    Nho, Kwangsik
    Saykin, Andrew J.
    Baillie, Rebecca
    Han, Xianlin
    Kaddurah-Daouk, Rima
    Martins, Ralph N.
    Meikle, Peter J.
    [J]. NATURE COMMUNICATIONS, 2020, 11 (01)
  • [10] Investigating Global Lipidome Alterations with the Lipid Network Explorer
    Koehler, Nikolai
    Rose, Tim Daniel
    Falk, Lisa
    Pauling, Josch Konstantin
    [J]. METABOLITES, 2021, 11 (08)