DNAH5 is associated with total lung capacity in chronic obstructive pulmonary disease

被引:21
作者
Lee, Jin Hwa [1 ,2 ]
McDonald, Merry-Lynn N. [1 ]
Cho, Michael H. [1 ,3 ]
Wan, Emily S. [1 ,3 ]
Castaldi, Peter J. [1 ]
Hunninghake, Gary M. [3 ]
Marchetti, Nathaniel [4 ]
Lynch, David A. [5 ,6 ]
Crapo, James D. [5 ]
Lomas, David A.
Coxson, Harvey O. [7 ]
Bakke, Per S. [8 ,9 ]
Silverman, Edwin K. [1 ,3 ]
Hersh, Craig P. [1 ,3 ]
机构
[1] Brigham & Womens Hosp, Channing Div Network Med, Boston, MA 02115 USA
[2] Ewha Womans Univ, Sch Med, Dept Internal Med, Div Pulm & Crit Care Med, Seoul, South Korea
[3] Brigham & Womens Hosp, Div Pulm & Crit Care, Boston, MA 02115 USA
[4] Temple Univ, Sch Med, Dept Med, Div Pulm & Crit Care Med, Philadelphia, PA 19122 USA
[5] Natl Jewish Hlth, Denver, CO USA
[6] UCL, Wolfson Inst Biomed Res, London, England
[7] Univ British Columbia, Dept Radiol, Vancouver, BC, Canada
[8] Univ Bergen, Dept Clin Sci, Bergen, Norway
[9] Haukeland Hosp, Dept Thorac Med, N-5021 Bergen, Norway
关键词
Pulmonary disease; Chronic obstructive; Hyperinflation; Genome-wide association analysis; Total lung capacity; DNAH5; GENOME-WIDE ASSOCIATION; AIRWAY WALL THICKNESS; EMPHYSEMA; METAANALYSIS; SMOKING; VOLUMES; GENE; HYPERINFLATION; CONTRIBUTES; IMPUTATION;
D O I
10.1186/s12931-014-0097-y
中图分类号
R56 [呼吸系及胸部疾病];
学科分类号
摘要
Background: Chronic obstructive pulmonary disease (COPD) is characterized by expiratory flow limitation, causing air trapping and lung hyperinflation. Hyperinflation leads to reduced exercise tolerance and poor quality of life in COPD patients. Total lung capacity (TLC) is an indicator of hyperinflation particularly in subjects with moderate-to-severe airflow obstruction. The aim of our study was to identify genetic variants associated with TLC in COPD. Methods: We performed genome-wide association studies (GWASs) in white subjects from three cohorts: the COPDGene Study; the Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints (ECLIPSE); and GenKOLS (Bergen, Norway). All subjects were current or ex-smokers with at least moderate airflow obstruction, defined by a ratio of forced expiratory volume in 1 second to forced vital capacity (FEV1/FVC) < 0.7 and FEV1 < 80% predicted on post-bronchodilator spirometry. TLC was calculated by using volumetric computed tomography scans at full inspiration (TLCCT). Genotyping in each cohort was completed, with statistical imputation of additional markers. To find genetic variants associated with TLCCT, linear regression models were used, with adjustment for age, sex, pack-years of smoking, height, and principal components for genetic ancestry. Results were summarized using fixed-effect meta-analysis. Results: Analysis of a total of 4,543 COPD subjects identified one genome-wide significant locus on chromosome 5p15.2 (rs114929486, beta = 0.42L, P = 4.66 x 10(-8)). Conclusions: In COPD, TLCCT was associated with a SNP in dynein, axonemal, heavy chain 5 (DNAH5), a gene in which genetic variants can cause primary ciliary dyskinesia. DNAH5 could have an effect on hyperinflation in COPD.
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页数:10
相关论文
共 52 条
[1]   Characterisation of COPD heterogeneity in the ECLIPSE cohort [J].
Agusti, Alvar ;
Calverley, Peter M. A. ;
Celli, Bartolome ;
Coxson, Harvey O. ;
Edwards, Lisa D. ;
Lomas, David A. ;
MacNee, William ;
Miller, Bruce E. ;
Rennard, Steve ;
Silverman, Edwin K. ;
Tal-Singer, Ruth ;
Wouters, Emiel ;
Yates, Julie C. ;
Vestbo, Jorgen .
RESPIRATORY RESEARCH, 2010, 11
[2]  
[Anonymous], 2013, JAMA-J AM MED ASSOC, DOI DOI 10.1001/jama.2013.13805
[3]  
[Anonymous], 2012, Nature
[4]   GenABEL: an R library for genome-wide association analysis [J].
Aulchenko, Yurii S. ;
Ripke, Stephan ;
Isaacs, Aaron ;
Van Duijn, Cornelia M. .
BIOINFORMATICS, 2007, 23 (10) :1294-1296
[5]   Pathophysiology of changes in absolute lung volumes [J].
Bancalari, E ;
Clausen, J .
EUROPEAN RESPIRATORY JOURNAL, 1998, 12 (01) :248-258
[6]   A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk [J].
Blair, David R. ;
Lyttle, Christopher S. ;
Mortensen, Jonathan M. ;
Bearden, Charles F. ;
Jensen, Anders Boeck ;
Khiabanian, Hossein ;
Melamed, Rachel ;
Rabadan, Raul ;
Bernstam, Elmer V. ;
Brunak, Soren ;
Jensen, Lars Juhl ;
Nicolae, Dan ;
Shah, Nigam H. ;
Grossman, Robert L. ;
Cox, Nancy J. ;
White, Kevin P. ;
Rzhetsky, Andrey .
CELL, 2013, 155 (01) :70-80
[7]   Cigarette smoking induces small airway epithelial epigenetic changes with corresponding modulation of gene expression [J].
Buro-Auriemma, Lauren J. ;
Salit, Jacqueline ;
Hackett, Neil R. ;
Walters, Matthew S. ;
Strulovici-Barel, Yael ;
Staudt, Michelle R. ;
Fuller, Jennifer ;
Mahmoud, Mai ;
Stevenson, Christopher S. ;
Hilton, Holly ;
Ho, Melisa W. Y. ;
Crystal, Ronald G. .
HUMAN MOLECULAR GENETICS, 2013, 22 (23) :4726-4738
[8]   Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls [J].
Burton, Paul R. ;
Clayton, David G. ;
Cardon, Lon R. ;
Craddock, Nick ;
Deloukas, Panos ;
Duncanson, Audrey ;
Kwiatkowski, Dominic P. ;
McCarthy, Mark I. ;
Ouwehand, Willem H. ;
Samani, Nilesh J. ;
Todd, John A. ;
Donnelly, Peter ;
Barrett, Jeffrey C. ;
Davison, Dan ;
Easton, Doug ;
Evans, David ;
Leung, Hin-Tak ;
Marchini, Jonathan L. ;
Morris, Andrew P. ;
Spencer, Chris C. A. ;
Tobin, Martin D. ;
Attwood, Antony P. ;
Boorman, James P. ;
Cant, Barbara ;
Everson, Ursula ;
Hussey, Judith M. ;
Jolley, Jennifer D. ;
Knight, Alexandra S. ;
Koch, Kerstin ;
Meech, Elizabeth ;
Nutland, Sarah ;
Prowse, Christopher V. ;
Stevens, Helen E. ;
Taylor, Niall C. ;
Walters, Graham R. ;
Walker, Neil M. ;
Watkins, Nicholas A. ;
Winzer, Thilo ;
Jones, Richard W. ;
McArdle, Wendy L. ;
Ring, Susan M. ;
Strachan, David P. ;
Pembrey, Marcus ;
Breen, Gerome ;
St Clair, David ;
Caesar, Sian ;
Gordon-Smith, Katherine ;
Jones, Lisa ;
Fraser, Christine ;
Green, Elain K. .
NATURE, 2007, 447 (7145) :661-678
[9]  
Casaburi Richard, 2006, Proc Am Thorac Soc, V3, P185, DOI 10.1513/pats.200508-095DO
[10]   Inspiratory-to-total lung capacity ratio predicts mortality in patients with chronic obstructive pulmonary disease [J].
Casanova, C ;
Cote, C ;
Torres, JPC ;
Aguirre-Jaime, A ;
Marin, JM ;
Pinto-Plata, V ;
Celli, BR .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2005, 171 (06) :591-597