Towards Decoding the Sequence-Based Grammar Governing the Functions of Intrinsically Disordered Protein Regions

被引:39
作者
Chong, Shasha [1 ,2 ]
Mir, Mustafa [1 ,3 ,4 ]
机构
[1] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA
[3] Childrens Hosp Philadelphia, Ctr Computat & Genom Med, Philadelphia, PA 19104 USA
[4] Univ Penn, Perelman Sch Med, Dept Cell & Dev Biol, Philadelphia, PA 19104 USA
关键词
intrinsically disordered regions; interactions; biomolecular assemblies; sequence; function; LIQUID-PHASE-SEPARATION; CELL-FREE FORMATION; PRION-LIKE DOMAINS; RNA-POLYMERASE-II; REPEAT EXPANSION; CONFORMATIONAL PROPERTIES; HEXANUCLEOTIDE REPEAT; GENE-EXPRESSION; IN-VITRO; BINDING;
D O I
10.1016/j.jmb.2020.11.023
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A substantial portion of the proteome consists of intrinsically disordered regions (IDRs) that do not fold into well-defined 3D structures yet perform numerous biological functions and are associated with a broad range of diseases. It has been a long-standing enigma how different IDRs successfully execute their specific functions. Further putting a spotlight on IDRs are recent discoveries of functionally relevant biomolecular assemblies, which in some cases form through liquid-liquid phase separation. At the molecular level, the formation of biomolecular assemblies is largely driven by weak, multivalent, but selective IDR-IDR interactions. Emerging experimental and computational studies suggest that the primary amino acid sequences of IDRs encode a variety of their interaction behaviors. In this review, we focus on findings and insights that connect sequence-derived features of IDRs to their conformations, propensities to form biomolecular assemblies, selectivity of interaction partners, functions in the context of physiology and disease, and regulation of function. We also discuss directions of future research to facilitate establishing a comprehensive sequence-function paradigm that will eventually allow prediction of selective interactions and specificity of function mediated by IDRs. (C) 2020 Elsevier Ltd. All rights reserved.
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页数:23
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