USHER: An algorithm for particle insertion in dense fluids

被引:105
作者
Delgado-Buscalioni, R [1 ]
Coveney, PV [1 ]
机构
[1] UCL, Dept Chem, Ctr Computat Sci, London WC1H 0AJ, England
关键词
D O I
10.1063/1.1579475
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The insertion of solvent particles in molecular dynamics simulations of complex fluids is required in many situations involving open systems, but this challenging task has been scarcely explored in the literature. We propose a simple and fast algorithm (USHER) that inserts the new solvent particles at locations where the potential energy has the desired prespecified value. For instance, this value may be set equal to the system's excess energy per particle in such a way that the inserted particles are energetically indistinguishable from the other particles present. During the search for the insertion site, the USHER algorithm uses a steepest-descent iterator with a displacement whose magnitude is adapted to the local features of the energy landscape. The only adjustable parameter in the algorithm is the maximum displacement, and we show that its optimal value can be extracted from an analysis of the structure of the potential energy landscape. We present insertion tests in periodic and nonperiodic systems filled with a Lennard-Jones fluid whose density ranges from moderate to high values. (C) 2003 American Institute of Physics.
引用
收藏
页码:978 / 987
页数:10
相关论文
共 13 条
[1]   Continuum-particle hybrid coupling for mass, momentum, and energy transfers in unsteady fluid flow [J].
Delgado-Buscalioni, R ;
Coveney, PV .
PHYSICAL REVIEW E, 2003, 67 (04) :13-467041
[2]   Hybrid model for combined particle and continuum dynamics [J].
Flekkoy, EG ;
Wagner, G ;
Feder, J .
EUROPHYSICS LETTERS, 2000, 52 (03) :271-276
[3]   Modelling protein unfolding: A solvent insertion protocol [J].
Goodfellow, JM ;
Knaggs, M ;
Williams, MA ;
Thornton, JM .
FARADAY DISCUSSIONS, 1996, 103 :339-347
[4]  
Hildebrand F.B., 1987, Introduction to numerical analysis
[5]  
Huang K., 1987, STAT MECH
[6]   DYNAMIC SIMULATIONS OF WATER AT CONSTANT CHEMICAL-POTENTIAL [J].
JI, J ;
CAGIN, T ;
PETTITT, BM .
JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (02) :1333-1342
[7]   THE LENNARD-JONES EQUATION OF STATE REVISITED [J].
JOHNSON, JK ;
ZOLLWEG, JA ;
GUBBINS, KE .
MOLECULAR PHYSICS, 1993, 78 (03) :591-618
[8]  
Leach A.R., 1996, MOL MODELING PRINCIP
[9]   Grand canonical ensemble molecular dynamics simulations: Reformulation of extended system dynamics approaches [J].
Lynch, GC ;
Pettitt, BM .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (20) :8594-8610
[10]   THEORETICAL CALCULATION OF THE LIQUID-VAPOR COEXISTENCE CURVE OF WATER, CHLOROFORM AND METHANOL WITH THE CAVITY-BIASED MONTE-CARLO METHOD IN THE GIBBS ENSEMBLE [J].
MEZEI, M .
MOLECULAR SIMULATION, 1992, 9 (04) :257-267