Complete Genome Sequence of Citrobacter freundii Siphophage Sazh

被引：1

作者：

Crossland, Whitney L. ^{[1
]}

Shaw, Justin P. ^{[1
]}

O'Leary, Chandler ^{[1
]}

Gill, Jason ^{[1
]}

Liu, Mei ^{[1
]}

机构：

[1] Texas A&M Univ, Ctr Phage Technol, College Stn, TX 77843 USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 50期

基金：

美国国家科学基金会;

关键词：

PREDICTION;

D O I：

10.1128/MRA.01317-19

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

As an opportunistic pathogen, Citrobacter freundii is involved in a wide spectrum of nosocomial infections. C. freundii phages may prove useful as therapeutics for treating infections caused by multidrug-resistant C. freundii strains. Here, we report the complete genome sequence of C. freundii siphophage Sazh, which is closely related to Enterobacteria phages T1 and TLS.

引用

页数：2

共 23 条

[1]

[Anonymous], 1959, BACTERIOPHAGES

[2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[3] BLAST plus : architecture and applications [J].

Camacho, Christiam ;

Coulouris, George ;

Avagyan, Vahram ;

Ma, Ning ;

Papadopoulos, Jason ;

Bealer, Kevin ;

Madden, Thomas L. .

BMC BIOINFORMATICS, 2009, 10

[4]

Chen Ying-Sheng, 2002, Journal of Microbiology Immunology and Infection, V35, P109

[5] Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology [J].

Cock, Peter J. A. ;

Gruening, Bjoern A. ;

Paszkiewicz, Konrad ;

Pritchard, Leighton .

PEERJ, 2013, 1

[6] Improved microbial gene identification with GLIMMER [J].

Delcher, AL ;

Harmon, D ;

Kasif, S ;

White, O ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641

[7] The Caulobacter crescentus phage phiCbK: genomics of a canonical phage [J].

Gill, Jason J. ;

Berry, Joel D. ;

Russell, William K. ;

Lessor, Lauren ;

Escobar-Garcia, Diego A. ;

Hernandez, Daniel ;

Kane, Ashley ;

Keene, Jennifer ;

Maddox, Matthew ;

Martin, Rebecca ;

Mohan, Sheba ;

Thorn, Ashlyn M. ;

Russell, David H. ;

Young, Ry .

BMC GENOMICS, 2012, 13

[8] InterProScan 5: genome-scale protein function classification [J].

Jones, Philip ;

Binns, David ;

Chang, Hsin-Yu ;

Fraser, Matthew ;

Li, Weizhong ;

McAnulla, Craig ;

McWilliam, Hamish ;

Maslen, John ;

Mitchell, Alex ;

Nuka, Gift ;

Pesseat, Sebastien ;

Quinn, Antony F. ;

Sangrador-Vegas, Amaia ;

Scheremetjew, Maxim ;

Yong, Siew-Yit ;

Lopez, Rodrigo ;

Hunter, Sarah .

BIOINFORMATICS, 2014, 30 (09) :1236-1240

[9] Prediction of lipoprotein signal peptides in Gram-negative bacteria [J].

Juncker, AS ;

Willenbrock, H ;

Von Heijne, G ;

Brunak, S ;

Nielsen, H ;

Krogh, A .

PROTEIN SCIENCE, 2003, 12 (08) :1652-1662

[10] Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes [J].

Krogh, A ;

Larsson, B ;

von Heijne, G ;

Sonnhammer, ELL .

JOURNAL OF MOLECULAR BIOLOGY, 2001, 305 (03) :567-580

← 1 2 3 →