Macrocycle ring deformation as the secondary design principle for light-harvesting complexes

被引:27
作者
De Vico, Luca [1 ,2 ]
Anda, Andre [2 ,3 ,4 ]
Osipov, Vladimir A. I. [5 ,6 ]
Madsen, Anders O. [7 ]
Hansen, Thorsten [2 ]
机构
[1] Univ Siena, Dept Biotechnol Chem & Pharm, I-53100 Siena, Italy
[2] Univ Copenhagen, Dept Chem, DK-2100 Copenhagen O, Denmark
[3] RMIT Univ, Sch Sci, Chem & Quantum Phys, Melbourne, Vic 3001, Australia
[4] RMIT Univ, Sch Sci, ARC Ctr Excellence Exciton Sci, Melbourne, Vic 3001, Australia
[5] Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USA
[6] Lund Univ, Dept Chem Phys, S-22240 Lund, Sweden
[7] Univ Copenhagen, Dept Pharm, DK-2100 Copenhagen O, Denmark
基金
澳大利亚研究理事会;
关键词
bacteriochlorophyll; LH3; MS-RASPT2; macrocycle ring deformation; chromophore mimics; QUANTUM-CHEMICAL CALCULATIONS; DENSITY-FUNCTIONAL THEORY; RHODOPSEUDOMONAS-ACIDOPHILA; BASIS-SETS; PHOTOPHYSICAL PROPERTIES; EXCITATION-ENERGIES; ANTENNA COMPLEXES; SPECTRAL DENSITY; PURPLE BACTERIA; EXCITED-STATES;
D O I
10.1073/pnas.1719355115
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Natural light-harvesting is performed by pigment-protein complexes, which collect and funnel the solar energy at the start of photosynthesis. The identity and arrangement of pigments largely define the absorption spectrum of the antenna complex, which is further regulated by a palette of structural factors. Small alterations are induced by pigment-protein interactions. In light-harvesting systems 2 and 3 from Rhodoblastus acidophilus, the pigments are arranged identically, yet the former has an absorption peak at 850 nm that is blue-shifted to 820 nm in the latter. While the shift has previously been attributed to the removal of hydrogen bonds, which brings changes in the acetyl moiety of the bacteriochlorophyll, recent work has shown that other mechanisms are also present. Using computational and modeling tools on the corresponding crystal structures, we reach a different conclusion: The most critical factor for the shift is the curvature of the macrocycle ring. The bending of the planar part of the pigment is identified as the second-most important design principle for the function of pigment-protein complexes-a finding that can inspire the design of novel artificial systems.
引用
收藏
页码:E9051 / E9057
页数:7
相关论文
共 57 条
[1]   Toward reliable density functional methods without adjustable parameters: The PBE0 model [J].
Adamo, C ;
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (13) :6158-6170
[2]   The Dalton quantum chemistry program system [J].
Aidas, Kestutis ;
Angeli, Celestino ;
Bak, Keld L. ;
Bakken, Vebjorn ;
Bast, Radovan ;
Boman, Linus ;
Christiansen, Ove ;
Cimiraglia, Renzo ;
Coriani, Sonia ;
Dahle, Pal ;
Dalskov, Erik K. ;
Ekstrom, Ulf ;
Enevoldsen, Thomas ;
Eriksen, Janus J. ;
Ettenhuber, Patrick ;
Fernandez, Berta ;
Ferrighi, Lara ;
Fliegl, Heike ;
Frediani, Luca ;
Hald, Kasper ;
Halkier, Asger ;
Hattig, Christof ;
Heiberg, Hanne ;
Helgaker, Trygve ;
Hennum, Alf Christian ;
Hettema, Hinne ;
Hjertenaes, Eirik ;
Host, Stinne ;
Hoyvik, Ida-Marie ;
Iozzi, Maria Francesca ;
Jansik, Branislav ;
Jensen, Hans Jorgen Aa. ;
Jonsson, Dan ;
Jorgensen, Poul ;
Kauczor, Joanna ;
Kirpekar, Sheela ;
Kjrgaard, Thomas ;
Klopper, Wim ;
Knecht, Stefan ;
Kobayashi, Rika ;
Koch, Henrik ;
Kongsted, Jacob ;
Krapp, Andreas ;
Kristensen, Kasper ;
Ligabue, Andrea ;
Lutnaes, Ola B. ;
Melo, Juan I. ;
Mikkelsen, Kurt V. ;
Myhre, Rolf H. ;
Neiss, Christian .
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2014, 4 (03) :269-284
[3]   Intermolecular Modes between LH2 Bacteriochlorophylls and Protein Residues: The Effect on the Excitation Energies [J].
Anda, Andre ;
De Vico, Luca ;
Hansen, Thorsten .
JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (22) :5499-5508
[4]   Multireference Excitation Energies for Bacteriochlorophylls A within Light Harvesting System 2 [J].
Anda, Andre ;
Hansen, Thorsten ;
De Vico, Luca .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2016, 12 (03) :1305-1313
[5]   A SPECTRAL CHARACTERIZATION OF THE LIGHT-HARVESTING PIGMENT-PROTEIN COMPLEXES FROM RHODOPSEUDOMONAS-ACIDOPHILA [J].
ANGERHOFER, A ;
COGDELL, RJ ;
HIPKINS, MF .
BIOCHIMICA ET BIOPHYSICA ACTA, 1986, 848 (03) :333-341
[6]   Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table [J].
Aquilante, Francesco ;
Autschbach, Jochen ;
Carlson, Rebecca K. ;
Chibotaru, Liviu F. ;
Delcey, Mickael G. ;
De Vico, Luca ;
Galvan, Ignacio Fdez ;
Ferre, Nicolas ;
Frutos, Luis Manuel ;
Gagliardi, Laura ;
Garavelli, Marco ;
Giussani, Angelo ;
Hoyer, Chad E. ;
Li Manni, Giovanni ;
Lischka, Hans ;
Ma, Dongxia ;
Malmqvist, Per Ake ;
Mueller, Thomas ;
Nenov, Artur ;
Olivucci, Massimo ;
Pedersen, Thomas Bondo ;
Peng, Daoling ;
Plasser, Felix ;
Pritchard, Ben ;
Reiher, Markus ;
Rivalta, Ivan ;
Schapiro, Igor ;
Segarra-Marti, Javier ;
Stenrup, Michael ;
Truhlar, Donald G. ;
Ungur, Liviu ;
Valentini, Alessio ;
Vancoillie, Steven ;
Veryazov, Valera ;
Vysotskiy, Victor P. ;
Weingart, Oliver ;
Zapata, Felipe ;
Lindh, Roland .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2016, 37 (05) :506-541
[7]   Software News and Update MOLCAS 7: The Next Generation [J].
Aquilante, Francesco ;
De Vico, Luca ;
Ferre, Nicolas ;
Ghigo, Giovanni ;
Malmqvist, Per-Ake ;
Neogrady, Pavel ;
Pedersen, Thomas Bondo ;
Pitonak, Michal ;
Reiher, Markus ;
Roos, Bjorn O. ;
Serrano-Andres, Luis ;
Urban, Miroslav ;
Veryazov, Valera ;
Lindh, Roland .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2010, 31 (01) :224-247
[8]   Excited States of a Significantly Ruffled Porphyrin: Computational Study on Structure-Induced Rapid Decay Mechanism via Intersystem Crossing [J].
Bai, Fu-Quan ;
Nakatani, Naoki ;
Nakayama, Akira ;
Hasegawa, Jun-ya .
JOURNAL OF PHYSICAL CHEMISTRY A, 2014, 118 (23) :4184-4194
[9]   Fine Tuning of Chlorophyll Spectra by Protein-Induced Ring Deformation [J].
Bednarczyk, Dominika ;
Dym, Orly ;
Prabahar, Vadivel ;
Peleg, Yoav ;
Pike, Douglas H. ;
Noy, Dror .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2016, 55 (24) :6901-6905
[10]  
Casida ME, 2012, ANNU REV PHYS CHEM, V63, P287, DOI [10.1146/annurev-physchem-032511-143803, 10.1146/annurev-physchem-032511-443803]