Environmental Determinants of and Impact on Childhood Asthma by the Bacterial Community in Household Dust

被引:46
作者
Maier, Raina M. [1 ]
Palmer, Michael W. [6 ]
Andersen, Gary L. [7 ]
Halonen, Marilyn J. [4 ,5 ]
Josephson, Karen C. [1 ]
Maier, Robert S. [8 ]
Martinez, Fernando D. [3 ,5 ]
Neilson, Julia W. [1 ]
Stern, Debra A. [5 ]
Vercelli, Donata [2 ,5 ]
Wright, Anne L. [3 ,5 ]
机构
[1] Univ Arizona, Dept Soil Water & Environm Sci, Tucson, AZ 85721 USA
[2] Univ Arizona, Dept Cell Biol & Anat, Tucson, AZ 85721 USA
[3] Univ Arizona, Dept Pediat, Tucson, AZ 85721 USA
[4] Univ Arizona, Dept Pharmacol, Tucson, AZ 85721 USA
[5] Univ Arizona, Arizona Resp Ctr, Tucson, AZ 85721 USA
[6] Oklahoma State Univ, Dept Bot, Stillwater, OK 74078 USA
[7] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Earth Sci, Berkeley, CA 94720 USA
[8] USA, Engineer Res & Dev Ctr, Vicksburg, MS USA
关键词
GRADIENT GEL-ELECTROPHORESIS; CANONICAL CORRESPONDENCE-ANALYSIS; 16S RIBOSOMAL-RNA; EARLY-LIFE; YOUNG-CHILDREN; EXPOSURE; RISK; POPULATIONS; ENDOTOXIN; AGE;
D O I
10.1128/AEM.01665-09
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Asthma increased dramatically in the last decades of the 20th century and is representative of chronic diseases that have been linked to altered microbial exposure and immune responses. Here we evaluate the effects of environmental exposures typically associated with asthma protection or risk on the microbial community structure of household dust ( dogs, cats, and day care). PCR-denaturing gradient gel analysis (PCR-DGGE) demonstrated that the bacterial community structure in house dust is significantly impacted by the presence of dogs or cats in the home (P = 0.0190 and 0.0029, respectively) and by whether or not children attend day care (P = 0.0037). In addition, significant differences in the dust bacterial community were associated with asthma outcomes in young children, including wheezing (P = 0.0103) and specific IgE (P = 0.0184). Our findings suggest that specific bacterial populations within the community are associated with either risk or protection from asthma.
引用
收藏
页码:2663 / 2667
页数:5
相关论文
共 29 条
[11]   Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community [J].
Ferris, MJ ;
Muyzer, G ;
Ward, DM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1996, 62 (02) :340-346
[12]   Reduced interferon γ production and soluble CD14 levels in early life predict recurrent wheezing by 1 year of age [J].
Guerra, S ;
Lohman, IC ;
Halonen, M ;
Martinez, FD ;
Wright, AL .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2004, 169 (01) :70-76
[13]   Bacterioplankton community diversity in a series of thermally stratified lakes [J].
Konopka, A ;
Bercot, T ;
Nakatsu, C .
MICROBIAL ECOLOGY, 1999, 38 (02) :126-135
[14]  
LEGENDRE L., 1983, NUMERICAL ECOLOGY
[15]  
Leps J., 2007, Multivariate Analysis of Ecological Data Using CANOCO, VThird
[16]   A longitudinal analysis of wheezing in young children: The independent effects of early life exposure to house dust endotoxin, allergens, and pets [J].
Litonjua, AA ;
Milton, DK ;
Celedon, JC ;
Ryan, L ;
Weiss, ST ;
Gold, DR .
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2002, 110 (05) :736-742
[17]   PROFILING OF COMPLEX MICROBIAL-POPULATIONS BY DENATURING GRADIENT GEL-ELECTROPHORESIS ANALYSIS OF POLYMERASE CHAIN REACTION-AMPLIFIED GENES-CODING FOR 16S RIBOSOMAL-RNA [J].
MUYZER, G ;
DEWAAL, EC ;
UITTERLINDEN, AG .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1993, 59 (03) :695-700
[18]   Predominance of Gram-positive bacteria in house dust in the low-allergy risk Russian Karelia [J].
Pakarinen, Jaakko ;
Hyvarinen, Anne ;
Salkinoja-Salonen, Mirja ;
Laitinen, Sirpa ;
Nevalainen, Aino ;
Makela, Mika J. ;
Haahtela, Tari ;
von Hertzen, Leena .
ENVIRONMENTAL MICROBIOLOGY, 2008, 10 (12) :3317-3325
[19]   Indices for detecting differences in species composition: Some simplifications of RDA and CCA [J].
Palmer, Michael W. ;
McGlinn, Daniel J. ;
Westerberg, Lars ;
Milberg, Per .
ECOLOGY, 2008, 89 (06) :1769-1771
[20]   PUTTING THINGS IN EVEN BETTER ORDER - THE ADVANTAGES OF CANONICAL CORRESPONDENCE-ANALYSIS [J].
PALMER, MW .
ECOLOGY, 1993, 74 (08) :2215-2230