A network-based method for identifying prognostic gene modules in lung squamous carcinoma

被引：11

作者：

Feng, Lin ^{[1
,2
]}

Tong, Run ^{[3
]}

Liu, Xiaohong ^{[4
]}

Zhang, Kaitai ^{[1
,2
]}

Wang, Guiqi ^{[5
]}

Zhang, Lei ^{[5
]}

An, Ning ^{[1
,2
]}

Cheng, Shujun ^{[1
,2
]}

机构：

[1] Peking Union Med Coll, Dept Etiol & Carcinogenesis, State Key Lab Mol Oncol, Beijing 100021, Peoples R China

[2] Chinese Acad Med Sci, Canc Inst Hosp, Beijing 100730, Peoples R China

[3] China Japan Friendship Hosp, Dept Resp & Crit Care Med, Beijing, Peoples R China

[4] Maternal & Child Hlth Care Hosp Haidian, Dept Gynecol & Obstet, Beijing, Peoples R China

[5] Chinese Acad Med Sci, Canc Hosp, Dept Endoscopy, Beijing 100730, Peoples R China

来源：

ONCOTARGET | 2016年 / 7卷 / 14期

基金：

国家高技术研究发展计划(863计划);

关键词：

lung squamous carcinoma; multi-stage carcinogenesis; network-based; greedy searching; prognostic module; STEM-CELLS; CANCER; SURVIVAL; EXPRESSION; CARCINOGENESIS; MECHANISMS; TRANSITION; EVOLUTION; EMT; BAD;

D O I：

10.18632/oncotarget.7632

中图分类号：

R73 [肿瘤学];

学科分类号：

100214 ;

摘要：

Similarities in gene expression between both developing embryonic and precancerous tissues and cancer tissues may help identify much-needed biomarkers and therapeutic targets in lung squamous carcinoma. In this study, human lung samples representing ten successive time points, from embryonic development to carcinogenesis, were used to construct global gene expression profiles. Differentially expressed genes with similar expression in precancerous and cancer samples were identified. Using a network-based greedy searching algorithm to analyze the training cohort (n = 69) and three independent testing cohorts, we successfully identified a significant 22-gene module in which expression levels were correlated with overall survival in lung squamous carcinoma patients.

引用

页码：18006 / 18020

页数：15

共 56 条

[21] Lung tumor NF-κB signaling promotes T cell-mediated immune surveillance [J].

Hopewell, Emily L. ;

Zhao, Weipeng ;

Fulp, William J. ;

Bronk, Crystina C. ;

Lopez, Alexis S. ;

Massengill, Michael ;

Antonia, Scott ;

Celis, Esteban ;

Haura, Eric B. ;

Enkemann, Steven A. ;

Chen, Dung-Tsa ;

Beg, Amer A. .

JOURNAL OF CLINICAL INVESTIGATION, 2013, 123 (06) :2509-2522

[22] Significance of Notch1-signaling Pathway in Human Pancreatic Development and Carcinogenesis [J].

Hu, Huankai ;

Zhou, Lan ;

Awadallah, Amad ;

Xin, Wei .

APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY, 2013, 21 (03) :242-247

[23] Overlapping gene expression in fetal mouse intestine development and human colorectal cancer [J].

Hu, M ;

Shivdasani, RA .

CANCER RESEARCH, 2005, 65 (19) :8715-8722

[24] Inflammation and cancer: An ancient link with novel potentials [J].

Hussain, S. Perwez ;

Harris, Curtis C. .

INTERNATIONAL JOURNAL OF CANCER, 2007, 121 (11) :2373-2380

[25]

Ideker Trey, 2002, Bioinformatics, V18 Suppl 1, pS233

[26] Natural history of bronchial preinvasive lesions [J].

Ishizumi, Taichiro ;

McWilliams, Annette ;

MacAulay, Calum ;

Gazdar, Adi ;

Lam, Stephen .

CANCER AND METASTASIS REVIEWS, 2010, 29 (01) :5-14

[27]

Jeng K. S., 2015, CRIT REV ONCOL HEMAT

[28] Network-based survival-associated module biomarker and its crosstalk with cell death genes in ovarian cancer [J].

Jin, Nana ;

Wu, Hao ;

Miao, Zhengqiang ;

Huang, Yan ;

Hu, Yongfei ;

Bi, Xiaoman ;

Wu, Deng ;

Qian, Kun ;

Wang, Liqiang ;

Wang, Changliang ;

Wang, Hongwei ;

Li, Kongning ;

Li, Xia ;

Wang, Dong .

SCIENTIFIC REPORTS, 2015, 5

[29]

Jin NN, 2015, SCI REPORTS, V5

[30] Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer [J].

Kaiser, Sergio ;

Park, Young-Kyu ;

Franklin, Jeffrey L. ;

Halberg, Richard B. ;

Yu, Ming ;

Jessen, Walter J. ;

Freudenberg, Johannes ;

Chen, Xiaodi ;

Haigis, Kevin ;

Jegga, Anil G. ;

Kong, Sue ;

Sakthivel, Bhuvaneswari ;

Xu, Huan ;

Reichling, Timothy ;

Azhar, Mohammad ;

Boivin, Gregory P. ;

Roberts, Reade B. ;

Bissahoyo, Anika C. ;

Gonzales, Fausto ;

Bloom, Greg C. ;

Eschrich, Steven ;

Carter, Scott L. ;

Aronow, Jeremy E. ;

Kleimeyer, John ;

Kleimeyer, Michael ;

Ramaswamy, Vivek ;

Settle, Stephen H. ;

Boone, Braden ;

Levy, Shawn ;

Graff, Jonathan M. ;

Doetschman, Thomas ;

Groden, Joanna ;

Dove, William F. ;

Threadgill, David W. ;

Yeatman, Timothy J. ;

Coffey, Robert J., Jr. ;

Aronow, Bruce J. .

GENOME BIOLOGY, 2007, 8 (07)

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