Genome-wide identification of the LBD transcription factor genes in common bean (Phaseolus vulgaris L.) and expression analysis under different abiotic stresses

被引：7

作者：

Du, Yanli ^{[1
,2
]}

Zhao, Qiang ^{[1
,2
]}

Li, Weijia ^{[1
]}

Geng, Jing ^{[1
]}

Li, Siqi ^{[1
]}

Yuan, Xiankai ^{[1
]}

Gu, Yanhua ^{[1
]}

Zhong, Jingwen ^{[1
]}

Zhang, Yuxian ^{[1
,2
]}

Du, Jidao ^{[1
,2
]}

机构：

[1] Heilongjiang Bayi Agr Univ, Agr Coll, Daqing 163319, Heilongjiang, Peoples R China

[2] Natl Coarse Cereals Engn Res Ctr, Daqing 163319, Heilongjiang, Peoples R China

来源：

JOURNAL OF PLANT INTERACTIONS | 2022年 / 17卷 / 01期

关键词：

LBD gene family; common bean; phylogenetic analysis; abiotic stress; synteny analysis; ARABIDOPSIS-THALIANA; DOMAIN PROTEIN; ASYMMETRIC-LEAVES2; GENE; ROOT-FORMATION; LATERAL ROOT; FAMILY; TOLERANCE; EVOLUTION; ENCODES; MEMBERS;

D O I：

10.1080/17429145.2022.2095449

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

Lateral organ boundary Domain (LBD) proteins are plant-specific transcription factors that play a key role in plant lateral organ development and stress tolerance. However, LBD gene has not been identified in the common bean (Phaseolus vulgaris L.). Here, a total of 47 common bean LBD genes (PvLBDs) were identified. Members of the same subfamily had similar genetic structures. Synteny analysis indicated that LBDs in the common bean genome have greater collinearity with soybean (Glycine max L.) than with Arabidopsis and rice (Oryza sativa L.). Additionally, 9 pair of segmental duplication genes were identified by collinearity analysis. Phytozome data analysis showed significant differences in PvLBD gene expression abundance between different developmental stages of the same tissue. The qRT-PCR results showed that NaCl, CdCl2, and HgCl2 stresses up-regulated 19% and down-regulated 81% of the PvLBD genes. This study provides a basis for further analysis of the function of the PvLBD gene family.

引用

页码：731 / 743

页数：13

共 59 条

[1] MaJAZ1 Attenuates the MaLBD5-Mediated Transcriptional Activation of Jasmonate Biosynthesis Gene MaAOC2 in Regulating Cold Tolerance of Banana Fruit [J].

Ba, Liang-jie ;

Kuang, Jian-fei ;

Chen, Jian-ye ;

Lug, Wang-jin .

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2016, 64 (04) :738-745

[2] MEME SUITE: tools for motif discovery and searching [J].

Bailey, Timothy L. ;

Boden, Mikael ;

Buske, Fabian A. ;

Frith, Martin ;

Grant, Charles E. ;

Clementi, Luca ;

Ren, Jingyuan ;

Li, Wilfred W. ;

Noble, William S. .

NUCLEIC ACIDS RESEARCH, 2009, 37 :W202-W208

[3] GeneWise and genomewise [J].

Birney, E ;

Clamp, M ;

Durbin, R .

GENOME RESEARCH, 2004, 14 (05) :988-995

[4] ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize [J].

Bortiri, E ;

Chuck, G ;

Vollbrecht, E ;

Rocheford, T ;

Martienssen, R ;

Hake, S .

PLANT CELL, 2006, 18 (03) :574-585

[5] A role for LATERAL ORGAN BOUNDARIES-DOMAIN 16 during the interaction Arabidopsis-Meloidogyne spp. provides a molecular link between lateral root and root-knot nematode feeding site development [J].

Cabrera, Javier ;

Diaz-Manzano, Fernando E. ;

Sanchez, Maria ;

Rosso, Marie-Noelle ;

Melillo, Teresa ;

Goh, Tatsuaki ;

Fukaki, Hidehiro ;

Cabello, Susana ;

Hofmann, Julia ;

Fenoll, Carmen ;

Escobar, Carolina .

NEW PHYTOLOGIST, 2014, 203 (02) :632-645

[6] The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana [J].

Cannon S.B. ;

Mitra A. ;

Baumgarten A. ;

Young N.D. ;

May G. .

BMC Plant Biology, 4 (1)

[7] A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era [J].

Chen, Yongming ;

Song, Wanjun ;

Xie, Xiaoming ;

Wang, Zihao ;

Guan, Panfeng ;

Peng, Huiru ;

Jiao, Yuannian ;

Ni, Zhongfu ;

Sun, Qixin ;

Guo, Weilong .

MOLECULAR PLANT, 2020, 13 (12) :1694-1708

[8] Turning a hobby into a job: How duplicated genes find new functions [J].

Conant, Gavin C. ;

Wolfe, Kenneth H. .

NATURE REVIEWS GENETICS, 2008, 9 (12) :938-950

[9] InterPro in 2017-beyond protein family and domain annotations [J].

Finn, Robert D. ;

Attwood, Teresa K. ;

Babbitt, Patricia C. ;

Bateman, Alex ;

Bork, Peer ;

Bridge, Alan J. ;

Chang, Hsin-Yu ;

Dosztanyi, Zsuzsanna ;

El-Gebali, Sara ;

Fraser, Matthew ;

Gough, Julian ;

Haft, David ;

Holliday, Gemma L. ;

Huang, Hongzhan ;

Huang, Xiaosong ;

Letunic, Ivica ;

Lopez, Rodrigo ;

Lu, Shennan ;

Marchler-Bauer, Aron ;

Mi, Huaiyu ;

Mistry, Jaina ;

Natale, Darren A. ;

Necci, Marco ;

Nuka, Gift ;

Orengo, Christine A. ;

Park, Youngmi ;

Pesseat, Sebastien ;

Piovesan, Damiano ;

Potter, Simon C. ;

Rawlings, Neil D. ;

Redaschi, Nicole ;

Richardson, Lorna ;

Rivoire, Catherine ;

Sangrador-Vegas, Amaia ;

Sigrist, Christian ;

Sillitoe, Ian ;

Smithers, Ben ;

Squizzato, Silvano ;

Sutton, Granger ;

Thanki, Narmada ;

Thomas, Paul D. ;

Tosatto, Silvio C. E. ;

Wu, Cathy H. ;

Xenarios, Ioannis ;

Yeh, Lai-Su ;

Young, Siew-Yit ;

Mitchell, Alex L. .

NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) :D190-D199

[10] Lateral root initiation requires the sequential induction of transcription factors LBD16 and PUCHI in Arabidopsis thaliana [J].

Goh, Tatsuaki ;

Toyokura, Koichi ;

Yamaguchi, Nobutoshi ;

Okamoto, Yoshie ;

Uehara, Takeo ;

Kaneko, Shutaro ;

Takebayashi, Yumiko ;

Kasahara, Hiroyuki ;

Ikeyama, Yoshifumi ;

Okushima, Yoko ;

Nakajima, Keiji ;

Mimura, Tetsuro ;

Tasaka, Masao ;

Fukaki, Hidehiro .

NEW PHYTOLOGIST, 2019, 224 (02) :749-760

← 1 2 3 4 5 6 →