In silico and in vitro Blood-Brain Barrier models for early stage drug discovery

被引:0
作者
Saber, Ralph [1 ]
Rihana, Sandy [1 ]
Mhanna, Rami [2 ]
机构
[1] Holy Spirit Univ Kasl USEK, Biomed Engn Dept, Jounieh, Lebanon
[2] Amer Univ Beirut AUB, Biomed Engn Program, Beirut, Lebanon
来源
2019 FIFTH INTERNATIONAL CONFERENCE ON ADVANCES IN BIOMEDICAL ENGINEERING (ICABME) | 2019年
关键词
blood-brain barrier model; ADMET; 3D printing; paper-based cell culture; artificial intelligence; classification; machine learning; genetic algorithm; artificial neural network; PENETRATION;
D O I
暂无
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
Drug discovery is a long and costly procedure that requires the prediction of many candidate molecules' attributes, including ADMET (Absorption, Distribution, Metabolism, Elimination and Toxicity) characteristics. Pharmaceutical companies complementarily use in silico and in vitro models at different stages for this purpose. The permeability across the blood-brain barrier (BBB) is a very important ADMET property since it inhibits the delivery of multiple drugs to the brain. In this context, this paper presents two BBB models designed and implemented for early stage drug discovery: an in silico and an in vitro one. The highest overall accuracy obtained with the former model was 96.23% with both Quadratic Discriminant Analysis and Support Vector Machine classifiers, after applying Genetic Algorithm for feature selection. In the latter case, we have proposed the novel approach of applying cellulose filter papers of 2 mu m porosity with PLA 3D printed inserts in order to build a valid in vitro model. Different coatings were tested to increase the adhesion of the endothelial cells to the substrate. The highest degree of confluency was obtained with the collagen type I coating. Moreover, the highest trans-endothelial electric resistance (TEER) value obtained was 45.6 +/- 12.07 Omega.cm(2) which is comparable to the values reported using the same cell line. This shows that paper-based cell culture can be a promising tool for the implementation of low-cost BBB models that could validate and refine computational models.
引用
收藏
页码:28 / 31
页数:4
相关论文
共 8 条
[1]   Support Vector Machines and Kernels for Computational Biology [J].
Ben-Hur, Asa ;
Ong, Cheng Soon ;
Sonnenburg, Soeren ;
Schoelkopf, Bernhard ;
Raetsch, Gunnar .
PLOS COMPUTATIONAL BIOLOGY, 2008, 4 (10)
[2]   Towards Better BBB Passage Prediction Using an Extensive and Curated Data Set [J].
Brito-Sanchez, Yoan ;
Marrero-Ponce, Yovani ;
Barigye, Stephen J. ;
Yaber-Goenaga, Ivan ;
Morell Perez, Carlos ;
Huong Le-Thi-Thu ;
Cherkasov, Artem .
MOLECULAR INFORMATICS, 2015, 34 (05) :308-330
[3]   A Simple Method to Predict Blood-Brain Barrier Permeability of Drug-Like Compounds Using Classification Trees [J].
Castillo-Garit, Juan A. ;
Casanola-Martin, Gerardo M. ;
Huong Le-Thi-Thu ;
Hai Pham-The ;
Barigye, Stephen J. .
MEDICINAL CHEMISTRY, 2017, 13 (07) :664-669
[4]  
Sayad S., LINEAR DISCRIMINANT
[5]  
Vastag M, 2009, CURR OPIN DRUG DISC, V12, P115
[6]   Identification of two immortalized cell lines, ECV304 and bEnd3, for in vitro permeability studies of blood-brain barrier [J].
Yang, Shu ;
Mei, Shenghui ;
Jin, Hong ;
Zhu, Bin ;
Tian, Yue ;
Huo, Jiping ;
Cui, Xu ;
Guo, Anchen ;
Zhao, Zhigang .
PLOS ONE, 2017, 12 (10)
[7]   ADME-Tox in drug discovery: integration of experimental and computational technologies [J].
Yu, HS ;
Adedoyin, A .
DRUG DISCOVERY TODAY, 2003, 8 (18) :852-861
[8]   Predicting penetration across the blood-brain barrier from simple descriptors and fragmentation schemes [J].
Zhao, Yuan H. ;
Abraham, Michael H. ;
Ibrahim, Adam ;
Fish, Paul V. ;
Cole, Susan ;
Lewis, Mark L. ;
de Groot, Marcel J. ;
Reynolds, Derek P. .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2007, 47 (01) :170-175