Reductive genome evolution at both ends of the bacterial population size spectrum

被引：110
作者：
Batut, Berenice [1 ,2 ]
Knibbe, Carole [3 ]
Marais, Gabriel [1 ]
Daubin, Vincent [1 ]
机构：
[1] Univ Lyon 1, CNRS, Lab Biometrie & Biol Evolut, UMR5558, F-69622 Villeurbanne, France
[2] Univ Lyon, Lab Informat Images & Syst Informat LIRIS, French Inst Res Comp Sci & Automat INRIA, Inst Natl Sci Appl INSA Lyon,CNRS,UMR5205, F-69621 Villeurbanne, France
[3] Univ Lyon 1, INRIA, CNRS, LIRIS,UMR5205, F-69622 Villeurbanne, France
来源：
NATURE REVIEWS MICROBIOLOGY | 2014年 / 12卷 / 12期
关键词：
MUTATION-RATE; ENDOSYMBIONTS BUCHNERA; SEQUENCE EVOLUTION; ADAPTIVE EVOLUTION; MICROBIAL GENOME; MULLERS RATCHET; DELETIONAL BIAS; GENETIC DRIFT; PROCHLOROCOCCUS; SELECTION;
D O I：
10.1038/nrmicro3331
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
Bacterial genomes show substantial variations in size. The smallest bacterial genomes are those of endocellular symbionts of eukaryotic hosts, which have undergone massive genome reduction and show patterns that are consistent with the degenerative processes that are predicted to occur in species with small effective population sizes. However, similar genome reduction is found in some free-living marine cyanobacteria that are characterized by extremely large populations. In this Opinion article, we discuss the different hypotheses that have been proposed to account for this reductive genome evolution at both ends of the bacterial population size spectrum.
引用
收藏
页码：841 / 850
页数：10
相关论文
共 101 条
  • [11] Sequence evolution in bacterial endosymbionts having extreme base compositions
    Clark, MA
    Moran, NA
    Baumann, P
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (11) : 1586 - 1598
  • [12] Ecosystem-specific selection pressures revealed through comparative population genomics
    Coleman, Maureen L.
    Chisholm, Sallie W.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (43) : 18634 - 18639
  • [13] Genomic islands and the ecology and evolution of Prochlorococcus
    Coleman, ML
    Sullivan, MB
    Martiny, AC
    Steglich, C
    Barry, K
    DeLong, EF
    Chisholm, SW
    [J]. SCIENCE, 2006, 311 (5768) : 1768 - 1770
  • [14] Virtual Genomes in Flux: An Interplay of Neutrality and Adaptability Explains Genome Expansion and Streamlining
    Cuypers, Thomas D.
    Hogeweg, Paulien
    [J]. GENOME BIOLOGY AND EVOLUTION, 2012, 4 (03): : 212 - 229
  • [15] Daubin V, 2004, SCIENCE, V306
  • [16] Eco-evolutionary dynamics, coding structure and the information threshold
    de Boer, Folkert K.
    Hogeweg, Paulien
    [J]. BMC EVOLUTIONARY BIOLOGY, 2010, 10
  • [17] Sequence Conservation and Functional Constraint on Intergenic Spacers in Reduced Genomes of the Obligate Symbiont Buchnera
    Degnan, Patrick H.
    Ochman, Howard
    Moran, Nancy A.
    [J]. PLOS GENETICS, 2011, 7 (09):
  • [18] Evolutionary implications of the frequent horizontal transfer of mismatch repair genes
    Denamur, E
    Lecointre, G
    Darlu, P
    Tenaillon, O
    Acquaviva, C
    Sayada, C
    Sunjevaric, I
    Rothstein, R
    Elion, J
    Taddei, F
    Radman, M
    Matic, I
    [J]. CELL, 2000, 103 (05) : 711 - 721
  • [19] Is junk DNA bunk? A critique of ENCODE
    Doolittle, W. Ford
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (14) : 5294 - 5300
  • [20] Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
    Dufresne, A
    Salanoubat, M
    Partensky, F
    Artiguenave, F
    Axmann, IM
    Barbe, V
    Duprat, S
    Galperin, MY
    Koonin, EV
    Le Gall, F
    Makarova, KS
    Ostrowski, M
    Oztas, S
    Robert, C
    Rogozin, IB
    Scanlan, DJ
    de Marsac, NT
    Weissenbach, J
    Wincker, P
    Wolf, YI
    Hess, WR
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (17) : 10020 - 10025
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