共 86 条
Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints
被引:19
作者:

Kim, Henry S.
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机构:
Univ Grenoble Alpes, IBS, F-38044 Grenoble, France
CNRS, IBS, F-38044 Grenoble, France
CEA, IBS, F-38044 Grenoble, France Univ Grenoble Alpes, IBS, F-38044 Grenoble, France

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机构:
[1] Univ Grenoble Alpes, IBS, F-38044 Grenoble, France
[2] CNRS, IBS, F-38044 Grenoble, France
[3] CEA, IBS, F-38044 Grenoble, France
[4] Inst Laue Langevin, F-38042 Grenoble 9, France
来源:
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
|
2015年
/
71卷
关键词:
small-angle scattering;
NMR restraints;
hydration shell;
X-RAY-SCATTERING;
BIOLOGICAL MACROMOLECULES;
NEUTRON-SCATTERING;
CONFORMATIONAL-CHANGES;
COMBINING NMR;
WEB SERVER;
PROTEIN;
SAXS;
COMPUTATION;
RNA;
D O I:
10.1107/S1399004714013923
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
Small-angle scattering (SAS) has witnessed a breathtaking renaissance and expansion over the past 15 years regarding the determination of biomacromolecular structures in solution. While important issues such as sample quality, good experimental practice and guidelines for data analysis, interpretation, presentation, publication and deposition are increasingly being recognized, crucial topics such as the uniqueness, precision and accuracy of the structural models obtained by SAS are still only poorly understood and addressed. The present article provides an overview of recent developments in these fields with a focus on the influence of complementary NMR restraints and of a hydration shell on the uniqueness of biomacromolecular models. As a first topic, the impact of incorporating NMR orientational restraints in addition to SAS distance restraints is discussed using a quantitative visual representation that illustrates how the possible conformational space of a two-body system is reduced as a function of the available data. As a second topic, the impact of a hydration shell on modelling parameters of a two-body system is illustrated, in particular on its inter-body distance. Finally, practical recommendations are provided to take both effects into account and promising future perspectives of SAS approaches are discussed.
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页码:57 / 66
页数:10
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DESY, Hamburg Unit, European Mol Biol Lab, Biol Small Angle Scattering Grp, Hamburg, Germany Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium

Tarbouriech, Nicolas
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Univ Grenoble 1, Unit Virus Host Cell Interact, European Mol Biol Lab, Grenoble, France
CNRS, Grenoble, France Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium

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Bekaert, Anais
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Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium

Burmeister, Wim P.
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Univ Grenoble 1, Unit Virus Host Cell Interact, European Mol Biol Lab, Grenoble, France Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium

Svergun, Dmitri I.
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CNRS, Grenoble, France
DESY, Hamburg Unit, European Mol Biol Lab, Biol Small Angle Scattering Grp, Hamburg, Germany Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium

Lambrecht, Bart N.
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VIB, Lab Immunoregulat & Mucosal Immunol, Dept Mol Biomed Res, Ghent, Belgium Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium

Vergauwen, Bjorn
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Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium

Savvides, Sawas N.
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Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium Univ Ghent, Dept Biochem & Microbiol, Unit Struct Biol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium