A Novel Necroptosis-Related lncRNA Signature Predicts the Prognosis of Lung Adenocarcinoma

被引:47
|
作者
Lu, Yinliang [1 ]
Luo, XueHui [1 ]
Wang, Qi [1 ]
Chen, Jie [1 ]
Zhang, Xinyue [1 ]
Li, YueSen [1 ]
Chen, Yuetong [1 ]
Li, Xinyue [1 ]
Han, Suxia [1 ]
机构
[1] Xi An Jiao Tong Univ, Dept Radiat Oncol, Affiliated Hosp 1, Xian, Peoples R China
关键词
lung adenocarcinoma; necroptosis gene; long noncoding RNA; tumor immune microenvironment; prognostic signature; NONCODING RNA; CELL-DEATH; CANCER; MICROENVIRONMENT; NECROSIS;
D O I
10.3389/fgene.2022.862741
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Necroptosis is closely related to the tumorigenesis and development of cancer. An increasing number of studies have demonstrated that targeting necroptosis could be a novel treatment strategy for cancer. However, the predictive potential of necroptosis-related long noncoding RNAs (lncRNAs) in lung adenocarcinoma (LUAD) still needs to be clarified. This study aimed to construct a prognostic signature based on necroptosis-related lncRNAs to predict the prognosis of LUAD.Methods: We downloaded RNA sequencing data from The Cancer Genome Atlas database. Co-expression network analysis, univariate Cox regression, and least absolute shrinkage and selection operator were adopted to identify necroptosis-related prognostic lncRNAs. We constructed the predictive signature by multivariate Cox regression. Kaplan-Meier analysis, time-dependent receiver operating characteristics, nomogram, and calibration curves were used to validate and evaluate the signature. Subsequently, we used gene set enrichment analysis (GSEA) and single-sample gene set enrichment analysis (ssGSEA) to explore the relationship between the predictive signature and tumor immune microenvironment of risk groups. Finally, the correlation between the predictive signature and immune checkpoint expression of LUAD patients was also analyzed.Results: We constructed a signature composed of 7 necroptosis-related lncRNAs (AC026355.2, AC099850.3, AF131215.5, UST-AS2, ARHGAP26-AS1, FAM83A-AS1, and AC010999.2). The signature could serve as an independent predictor for LUAD patients. Compared with clinicopathological variables, the necroptosis-related lncRNA signature has a higher diagnostic efficiency, with the area under the receiver operating characteristic curve being 0.723. Meanwhile, when patients were stratified according to different clinicopathological variables, the overall survival of patients in the high-risk group was shorter than that of those in the low-risk group. GSEA showed that tumor- and immune-related pathways were mainly enriched in the low-risk group. ssGSEA further confirmed that the predictive signature was significantly related to the immune status of LUAD patients. The immune checkpoint analysis displayed that low-risk patients had a higher immune checkpoint expression, such as CTLA-4, HAVCR2, PD-1, and TIGIT. This suggested that immunological function is more active in the low-risk group LUAD patients who might benefit from checkpoint blockade immunotherapies.Conclusion: The predictive signature can independently predict the prognosis of LUAD, helps elucidate the mechanism of necroptosis-related lncRNAs in LUAD, and provides immunotherapy guidance for patients with LUAD.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] Construction of a Novel Prognostic Signature in Lung Adenocarcinoma Based on Necroptosis-Related lncRNAs
    Diao, Xiayao
    Guo, Chao
    Li, Shanqing
    FRONTIERS IN GENETICS, 2022, 13
  • [2] A novel necroptosis-related lncRNA signature predicts the prognosis and immune microenvironment of hepatocellular carcinoma
    Wang, Jianguo
    Shen, Bingbing
    Liu, Xinyuan
    Jiang, Jianxin
    FRONTIERS IN GENETICS, 2022, 13
  • [3] A Novel Necroptosis-Related lncRNA Signature for Predicting Prognosis and Immune Response of Glioma
    Wu, Zhikang
    Liu, Meimei
    Fu, Jinlong
    Li, Jinwei
    Qin, Lingyao
    Wu, Liuying
    Chen, Hongmou
    Yan, Xianlei
    Liu, Quan
    Zheng, Jiemin
    BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [4] Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma
    Wu, Zixuan
    Huang, Xuyan
    Cai, Minjie
    Huang, Peidong
    Guan, Zunhui
    AGING-US, 2022, 14 (02): : 869 - 891
  • [5] Identification and Validation of Necroptosis-Related LncRNA Signature in Hepatocellular Carcinoma for Prognosis Estimation and Microenvironment Status
    Chen, Cong
    Wu, Yumeng
    Chen, Kang
    Xia, Zicong
    Liu, Xiaokan
    Zhang, Chaojie
    Zhao, Hui
    Shen, Aiguo
    FRONTIERS IN GENETICS, 2022, 13
  • [6] Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma
    Song, Yuqi
    Zhang, Jinming
    Fang, Linan
    Liu, Wei
    FRONTIERS IN GENETICS, 2022, 13
  • [7] Necroptosis-related lncRNAs: biomarkers for predicting prognosis and immune response in lung adenocarcinoma
    Lin, Chunxuan
    Lin, Kunpeng
    Lin, Xiaochun
    Yuan, Hai
    Zhang, Yingying
    Xie, Zhijun
    Dai, Yong
    Liu, Luhao
    Shimada, Yoshihisa
    Goto, Taichiro
    Okuda, Katsuhiro
    Liu, Taisheng
    Wei, Chenggong
    TRANSLATIONAL LUNG CANCER RESEARCH, 2024, 13 (10) : 2713 - 2728
  • [8] A Necroptosis-Related lncRNA-Based Signature to Predict Prognosis and Probe Molecular Characteristics of Stomach Adenocarcinoma
    Luo, Lianghua
    Li, Leyan
    Liu, Li
    Feng, Zongfeng
    Zeng, Qingwen
    Shu, Xufeng
    Cao, Yi
    Li, Zhengrong
    FRONTIERS IN GENETICS, 2022, 13
  • [9] Necroptosis-related lncRNA-based novel signature to predict the prognosis and immune landscape in soft tissue sarcomas
    Long, Qiuzhong
    Li, Zhengtian
    Yang, Wenkang
    Huang, Ke
    Du, Gang
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2024, 150 (04)
  • [10] Identification of necroptosis-related signature and tumor microenvironment infiltration characteristics in lung adenocarcinoma
    Liu, Taisheng
    Guo, Liyi
    Liu, Guihong
    Dai, Zili
    Wang, Li
    Lin, Baisheng
    Hu, Xiaoshan
    Wang, Jian
    Zhang, Jian
    LUNG CANCER, 2022, 172 : 75 - 85