The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China

被引：5

作者：

Ma, Chen-Xin ^{[1
,2
]}

Yan, Hai-Fei ^{[1
]}

Ge, Xue-Jun ^{[1
]}

机构：

[1] Chinese Acad Sci, South China Bot Garden, Key Lab Plant Resources Conservat & Sustainable U, Guangzhou, Peoples R China

[2] Univ Chinese Acad Sci, Beijing, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 07期

关键词：

Fagaceae; Lithocarpus hancei; Phylogeny; plastid genome;

D O I：

10.1080/23802359.2021.1935357

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Lithocarpus hancei (Benth.) Rehd is a widely distributed evergreen tree with broad-leaves that dominates the lower stories of the forest in China. Here, we sequenced and assembled the complete chloroplast genome of L. hancei. The genome is 161,304 bp with one large single copy (LSC: 90,585 bp), one small single copy (SSC: 18,959 bp), and two inverted repeat (IR) regions (IRa and IRb, each 25,880 bp). It contains 117 genes, including 80 protein-coding genes, 33 tRNA genes, and four rRNA genes. Phylogenetic analysis of 21 representative cp genomes of the Fagaceae suggests Lithocarpus is monophyletic with strong bootstrap support and also that L. hancei is closely related to L. polystachyus. The cp genome is important for constructing a robust phylogeny of Lithocarpus and Fagaceae for future study.

引用

页码：2022 / 2023

页数：2

共 13 条

[1] Complete chloroplast genome sequence ofBarleria prionitis, comparative chloroplast genomics and phylogenetic relationships among Acanthoideae
Alzahrani, Dhafer A.
Yaradua, Samaila S.
Albokhari, Enas J.
Abba, Abidina
[J]. BMC GENOMICS, 2020, 21 (01)
[2] [Anonymous], 1999, FLORA CHINA
[3] BIRKY CW, 1983, GENETICS, V103, P513
[4] Phylogeography of the Southeast Asian stone oaks (Lithocarpus)
Cannon, CH
Manos, PS
[J]. JOURNAL OF BIOGEOGRAPHY, 2003, 30 (02) : 211 - 226
[5] Morphology and growth of deciduous and evergreen broadleaved saplings under different light conditions in a Chinese beech forest with dense bamboo undergrowth
Cao, KF
[J]. ECOLOGICAL RESEARCH, 2001, 16 (03) : 509 - 517
[6] Doyle JJ., 1987, PHYTOCHEMISTRY B, V19, P11, DOI [DOI 10.2307/4119796, DOI 10.1016/0031-9422(80)85004-7]
[7] GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Jin, Jian-Jun
Yu, Wen-Bin
Yang, Jun-Bo
Song, Yu
dePamphilis, Claude W.
Yi, Ting-Shuang
Li, De-Zhu
[J]. GENOME BIOLOGY, 2020, 21 (01)
[8] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, Kazutaka
Standley, Daron M.
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
[9] VISTA:: visualizing global DNA sequence alignments of arbitrary length
Mayor, C
Brudno, M
Schwartz, JR
Poliakov, A
Rubin, EM
Frazer, KA
Pachter, LS
Dubchak, I
[J]. BIOINFORMATICS, 2000, 16 (11) : 1046 - 1047
[10] RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, Alexandros
[J]. BIOINFORMATICS, 2014, 30 (09) : 1312 - 1313

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