Communication: Modeling charge-sign asymmetric solvation free energies with nonlinear boundary conditions

被引:21
作者
Bardhan, Jaydeep P. [1 ]
Knepley, Matthew G. [2 ]
机构
[1] Northeastern Univ, Dept Mech & Ind Engn, Boston, MA 02115 USA
[2] Univ Chicago, Computat Inst, Chicago, IL 60637 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
POISSON-BOLTZMANN EQUATION; CONTINUUM ELECTROSTATICS CALCULATIONS; HYDRATION FREE-ENERGIES; ION HYDRATION; BORN MODEL; DIELECTRIC SATURATION; SOLVENT MODELS; LIQUID WATER; DYNAMICS; CONVERGENCE;
D O I
10.1063/1.4897324
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We show that charge-sign-dependent asymmetric hydration can be modeled accurately using linear Poisson theory after replacing the standard electric-displacement boundary condition with a simple nonlinear boundary condition. Using a single multiplicative scaling factor to determine atomic radii from molecular dynamics Lennard-Jones parameters, the new model accurately reproduces MD free-energy calculations of hydration asymmetries for: (i) monatomic ions, (ii) titratable amino acids in both their protonated and unprotonated states, and (iii) the Mobley "bracelet" and "rod" test problems [ D. L. Mobley, A. E. Barber II, C. J. Fennell, and K. A. Dill, "Charge asymmetries in hydration of polar solutes," J. Phys. Chem. B 112, 2405-2414 (2008)]. Remarkably, the model also justifies the use of linear response expressions for charging free energies. Our boundary-element method implementation demonstrates the ease with which other continuum-electrostatic solvers can be extended to include asymmetry. (C) 2014 AIP Publishing LLC.
引用
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页数:6
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