The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate

被引:67
作者
Chu, Dominique [1 ]
Barnes, David J. [1 ]
机构
[1] Univ Kent, Sch Comp, Canterbury CT2 7NF, Kent, England
关键词
CARBON CATABOLITE REPRESSION; EXACT STOCHASTIC SIMULATION; ESCHERICHIA-COLI; GENE-REGULATION; OPTIMALITY; LIMITS;
D O I
10.1038/srep25191
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Bi-phasic or diauxic growth is often observed when microbes are grown in a chemically defined medium containing two sugars (for example glucose and lactose). Typically, the two growth stages are separated by an often lengthy phase of arrested growth, the so-called lag-phase. Diauxic growth is usually interpreted as an adaptation to maximise population growth in multi-nutrient environments. However, the lag-phase implies a substantial loss of growth during the switch-over. It therefore remains unexplained why the lag-phase is adaptive. Here we show by means of a stochastic simulation model based on the bacterial PTS system that it is not possible to shorten the lag-phase without incurring a permanent growth-penalty. Mechanistically, this is due to the inherent and well established limitations of biological sensors to operate efficiently at a given resource cost. Hence, there is a trade-off between lost growth during the diauxic switch and the long-term growth potential of the cell. Using simulated evolution we predict that the lag-phase will evolve depending on the distribution of conditions experienced during adaptation. In environments where switching is less frequently required, the lag-phase will evolve to be longer whereas, in frequently changing environments, the lag-phase will evolve to be shorter.
引用
收藏
页数:15
相关论文
共 39 条
[1]   PHYSICS OF CHEMORECEPTION [J].
BERG, HC ;
PURCELL, EM .
BIOPHYSICAL JOURNAL, 1977, 20 (02) :193-219
[2]   Physical limits to biochemical signaling [J].
Bialek, W ;
Setayeshgar, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (29) :10040-10045
[3]   A Non-Linear Deterministic Model for Regulation of Diauxic Lag on Cellobiose by the Pneumococcal Multidomain Transcriptional Regulator CelR [J].
Boianelli, Alessandro ;
Bidossi, Alessandro ;
Gualdi, Luciana ;
Mulas, Laura ;
Mocenni, Chiara ;
Pozzi, Gianni ;
Vicino, Antonio ;
Oggioni, Marco R. .
PLOS ONE, 2012, 7 (10)
[4]   Single-Cell Dynamics Reveals Sustained Growth during Diauxic Shifts [J].
Boulineau, Sarah ;
Tostevin, Filipe ;
Kiviet, Daniel J. ;
ten Wolde, Pieter Rein ;
Nghe, Philippe ;
Tans, Sander J. .
PLOS ONE, 2013, 8 (04)
[5]  
Brückner R, 2002, FEMS MICROBIOL LETT, V209, P141
[6]   How to make a Biological Switch [J].
Cherry, JL ;
Adler, FR .
JOURNAL OF THEORETICAL BIOLOGY, 2000, 203 (02) :117-133
[7]   A stochastic single-molecule event triggers phenotype switching of a bacterial cell [J].
Choi, Paul J. ;
Cai, Long ;
Frieda, Kirsten ;
Xie, Sunney .
SCIENCE, 2008, 322 (5900) :442-446
[8]   The architecture of eukaryotic translation [J].
Chu, Dominique ;
von der Haar, Tobias .
NUCLEIC ACIDS RESEARCH, 2012, 40 (20) :10098-10106
[9]   In silico evolution of diauxic growth [J].
Chu, Dominique F. .
BMC EVOLUTIONARY BIOLOGY, 2015, 15
[10]   Unraveling Adaptation in Eukaryotic Pathways: Lessons from Protocells [J].
De Palo, Giovanna ;
Endres, Robert G. .
PLOS COMPUTATIONAL BIOLOGY, 2013, 9 (10)