Multiscale Modeling of alternative splicing regulation

被引:0
|
作者
Eveillard, D
Ropers, D
de Jong, H
Branlant, C
Bockmayr, A
机构
[1] Univ Henri Poincare, LORIA, F-54506 Vandoeuvre Les Nancy, France
[2] UHP, CNRS, UMR 7567, Lab Maturat ARN & Enzymol Mol, F-54506 Vandoeuvre Les Nancy, France
[3] INRIA Rhone Alps, Helix Project, F-38334 St Ismier, France
关键词
D O I
暂无
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Alternative splicing is a key process in post-transcriptional regulation, by which several kinds of mature-RNA can be obtained from the same premessenger RNA. Using a constraint programming approach, we model the alternative splicing regulation at different scales (single site vs. multiple sites), thus exploiting different types of available experimental data.
引用
收藏
页码:75 / 87
页数:13
相关论文
共 50 条
  • [1] Regulation of Alternative Splicing
    Hertel, Klemens
    Mueller, William
    Busch, Anke
    Erkelenz, Steffen
    Schaal, Heiner
    FASEB JOURNAL, 2013, 27
  • [2] REGULATION OF ALTERNATIVE SPLICING
    Szczesniak, Michal
    Szweykowska-Kulinska, Zofia
    POSTEPY BIOLOGII KOMORKI, 2009, 36 (01) : 23 - 35
  • [3] Regulation by alternative splicing
    Yair Aaronson
    Eran Meshorer
    Nature, 2013, 498 : 176 - 177
  • [4] Epigenetic regulation of alternative splicing
    Zhu, Li-Yuan
    Zhu, Yi-Ran
    Dai, Dong-Jun
    Wang, Xian
    Jin, Hong-Chuan
    AMERICAN JOURNAL OF CANCER RESEARCH, 2018, 8 (12): : 2346 - 2358
  • [5] Combinatorial regulation of alternative splicing
    Shenasa, Hossein
    Hertel, Klemens J.
    BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2019, 1862 (11-12):
  • [6] Regulation of alternative splicing by snoRNAs
    Kishore, S.
    Stamm, S.
    COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 2006, 71 : 329 - 334
  • [7] Regulation of Alternative Splicing by snoRNAs
    Kishore, S.
    Stamm, S.
    REGULATORY RNAS, 2006, 71 : 329 - 334
  • [8] Regulation of alternative splicing by RNA editing
    Susan M. Rueter
    T. Renee Dawson
    Ronald B. Emeson
    Nature, 1999, 399 : 75 - 80
  • [9] STEM CELLS Regulation by alternative splicing
    Aaronson, Yair
    Meshorer, Eran
    NATURE, 2013, 498 (7453) : 176 - 177
  • [10] Regulation of Alternative Splicing by Steroid Hormones
    Le Billan, Florian
    Umogbai, Gloria
    Cummins, Carolyn L.
    ENDOCRINOLOGY, 2023, 164 (07)