Computational and Experimental Advances in Drug Repositioning for Accelerated Therapeutic Stratification

被引:61
|
作者
Shameer, Khader [1 ]
Readhead, Ben [1 ]
Dudley, Joel T. [1 ,2 ]
机构
[1] Icahn Sch Med Mt Sinai, Icahn Inst Genom & Multiscale Biol, Dept Genet & Genom Sci, New York, NY 10029 USA
[2] Icahn Sch Med Mt Sinai, Dept Hlth Evidence & Policy, New York, NY 10029 USA
关键词
Individualized medicine; Drug repositioning; Network analysis; Translational bioinformatics; Disease comorbidity; Orphan disease; Biomedical data mining; CONNECTIVITY MAP; OLD DRUGS; PRECLINICAL MODEL; NETWORK TOPOLOGY; CANCER; DISCOVERY; PREDICTION; TARGETS; GENES; PHARMACOGENOMICS;
D O I
10.2174/1568026615666150112103510
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Drug repositioning is an important component of therapeutic stratification in the precision medicine paradigm. Molecular profiling and more sophisticated analysis of longitudinal clinical data are refining definitions of human diseases, creating needs and opportunities to re-target or reposition approved drugs for alternative indications. Drug repositioning studies have demonstrated success in complex diseases requiring improved therapeutic interventions as well as orphan diseases without any known treatments. An increasing collection of available computational and experimental methods that leverage molecular and clinical data enable diverse drug repositioning strategies. Integration of translational bioinformatics resources, statistical methods, chemoinformatics tools and experimental techniques (including medicinal chemistry techniques) can enable the rapid application of drug repositioning on an increasingly broad scale. Efficient tools are now available for systematic drug-repositioning methods using large repositories of compounds with biological activities. Medicinal chemists along with other translational researchers can play a key role in various aspects of drug repositioning. In this review article, we briefly summarize the history of drug repositioning, explain concepts behind drug repositioning methods, discuss recent computational and experimental advances and highlight available open access resources for effective drug repositioning investigations. We also discuss recent approaches in utilizing electronic health record for outcome assessment of drug repositioning and future avenues of drug repositioning in the light of targeting disease comorbidities, underserved patient communities, individualized medicine and socioeconomic impact.
引用
收藏
页码:5 / 20
页数:16
相关论文
共 50 条
  • [31] Computational drug repositioning based on the relationships between substructure-indication
    Yang, Jingbo
    Zhang, Denan
    Liu, Lei
    Li, Guoqi
    Cai, Yiyang
    Zhang, Yan
    Jin, Hongbo
    Chen, Xiujie
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (04)
  • [32] Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
    Le, Brian L.
    Andreoletti, Gaia
    Oskotsky, Tomiko
    Vallejo-Gracia, Albert
    Rosales, Romel
    Yu, Katharine
    Kosti, Idit
    Leon, Kristoffer E.
    Bunis, Daniel G.
    Li, Christine
    Kumar, G. Renuka
    White, Kris M.
    Garcia-Sastre, Adolfo
    Ott, Melanie
    Sirota, Marina
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [33] Computational Drug-repositioning Approach Identifying Sirolimus as a Potential Therapeutic Option for Inflammatory Dilated Cardiomyopathy
    Shibata, Kyoko
    Endo, Toshinori
    Kuribayashi, Yoshikazu
    DRUG RESEARCH, 2019, 69 (10) : 565 - 571
  • [34] gene2drug: a computational tool for pathway-based rational drug repositioning
    Napolitano, Francesco
    Carrella, Diego
    Mandriani, Barbara
    Pisonero-Vaquero, Sandra
    Sirci, Francesco
    Medina, Diego L.
    Brunetti-Pierri, Nicola
    di Bernardo, Diego
    BIOINFORMATICS, 2018, 34 (09) : 1498 - 1505
  • [35] Exploration of Therapeutic Drugs for Gastric Cancer Using Drug Repositioning Strategy
    Qi X.
    Xun D.
    Feng S.
    Gao N.
    Hou S.
    Lu Y.
    Huang L.
    Chen J.
    Dianzi Keji Daxue Xuebao/Journal of the University of Electronic Science and Technology of China, 2023, 52 (05): : 659 - 666
  • [36] Computational Drug Repositioning with Random Walk on a Heterogeneous Network
    Luo, Huimin
    Wang, Jianxin
    Li, Min
    Luo, Junwei
    Ni, Peng
    Zhao, Kaijie
    Wu, Fang-Xiang
    Pan, Yi
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 16 (06) : 1890 - 1900
  • [37] Hybrid attentional memory network for computational drug repositioning
    Jieyue He
    Xinxing Yang
    Zhuo Gong
    lbrahim Zamit
    BMC Bioinformatics, 21
  • [38] Computational drug repositioning based on multi-similarities bilinear matrix factorization
    Yang, Mengyun
    Wu, Gaoyan
    Zhao, Qichang
    Li, Yaohang
    Wang, Jianxin
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (04)
  • [39] Revolutionizing ovarian cancer therapy by drug repositioning for accelerated and cost-effective treatments
    Villegas-Vazquez, Edgar Yebran
    Marin-Carrasco, Francisco Pavel
    Reyes-Hernandez, Octavio Daniel
    Baez-Gonzalez, Andrea S.
    Bustamante-Montes, Lilia Patricia
    Padilla-Benavides, Teresita
    Quintas-Granados, Laura Itzel
    Figueroa-Gonzalez, Gabriela
    FRONTIERS IN ONCOLOGY, 2025, 14
  • [40] Network-Based Drug Ranking and Repositioning with Respect to DrugBank Therapeutic Categories
    Re, Matteo
    Valentini, Giorgio
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2013, 10 (06) : 1359 - 1371