Identification And validation of transcription factor genes involved in prostate cancer metastasis

被引:0
作者
Su, Yiming [1 ]
Zhou, Wenhao [1 ]
Zhang, Yu [1 ]
Wang, Xiaohai [1 ]
Han, Bangmin [1 ]
机构
[1] Shanghai Jiao Tong Univ, Sch Med, Shanghai Gen Hosp, Dept Urol, 100 Haining Rd, Shanghai 200080, Peoples R China
基金
上海市自然科学基金;
关键词
Prostate cancer; metastasis; prognosis; bioinformatics analysis; biomarkers; C-FOS; EXPRESSION; PROGRESSION; PATHWAYS; CELLS; FOXM1;
D O I
10.1080/26895293.2021.1915394
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Metastasis is one of the most significant independent risk factors that can negatively affect prostate cancer (PCa) patients. However, the exact mechanisms have not been fully elucidated. To illustrate the mechanisms underlying PCa metastasis, we conducted a series of integrated bioinformatics analyses. The essential genes involved in PCa metastasis were obtained by analyzing differentially expressed genes (DEGs) between metastatic PCa and localized PCa. Gene Ontology and KEGG pathway enrichment analysis were performed for functional annotation. Protein-protein interaction networks were constructed for hub gene selection. Three transcription factor genes (FOS, CENPA, and FOXM1) were identi?ed by integrating the hub genes with human transcription factors from The Human Transcription Factors database. Moreover, expression validation and prognostic analysis of the three transcription factor genes were carried out on GEO, TCGA, GEPIA, and the Human Protein Atlas, respectively. Further verification showed that expression variation of the three transcription factor genes existed between metastatic PCa and localized PCa as well as between localized PCa and normal prostate. In addition, different expressions of the three transcription factor genes were associated with the prognosis of localized PCa. In summary, the three transcription factor genes can serve as potential prognostic biomarkers as well as therapeutic targets for PCa.
引用
收藏
页码:287 / 299
页数:13
相关论文
共 39 条
[1]   Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy [J].
Aytes, Alvaro ;
Mitrofanova, Antonina ;
Lefebvre, Celine ;
Alvarez, Mariano J. ;
Castillo-Martin, Mireia ;
Zheng, Tian ;
Eastham, James A. ;
Gopalan, Anuradha ;
Pienta, Kenneth J. ;
Shen, Michael M. ;
Califano, Andrea ;
Abate-Shen, Cory .
CANCER CELL, 2014, 25 (05) :638-651
[2]   Activation of GPR30 inhibits the growth of prostate cancer cells through sustained activation of Erk1/2, c-jun/c-fos-dependent upregulation of p21, and induction of G2 cell-cycle arrest [J].
Chan, Q. K. Y. ;
Lam, H-M ;
Ng, C-F ;
Lee, A. Y. Y. ;
Chan, E. S. Y. ;
Ng, H-K ;
Ho, S-M ;
Lau, K-M .
CELL DEATH AND DIFFERENTIATION, 2010, 17 (09) :1511-1523
[3]   Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process [J].
Chandran, Uma R. ;
Ma, Changqing ;
Dhir, Rajiv ;
Bisceglia, Michelle ;
Lyons-Weiler, Maureen ;
Liang, Wenjing ;
Michalopoulos, George ;
Becich, Michael ;
Monzon, Federico A. .
BMC CANCER, 2007, 7 (1)
[4]   UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses [J].
Chandrashekar, Darshan S. ;
Bashel, Bhuwan ;
Balasubramanya, Sai Akshaya Hodigere ;
Creighton, Chad J. ;
Ponce-Rodriguez, Israel ;
Chakravarthi, Balabhadrapatruni V. S. K. ;
Varambally, Sooryanarayana .
NEOPLASIA, 2017, 19 (08) :649-658
[5]   cytoHubba: identifying hub objects and sub-networks from complex interactome [J].
Chin, Chia-Hao ;
Chen, Shu-Hwa ;
Wu, Hsin-Hung ;
Ho, Chin-Wen ;
Ko, Ming-Tat ;
Lin, Chung-Yen .
BMC SYSTEMS BIOLOGY, 2014, 8
[6]   Molecular mechanisms of metastasis in prostate cancer [J].
Clarke, Noel W. ;
Hart, Claire A. ;
Brown, Mick D. .
ASIAN JOURNAL OF ANDROLOGY, 2009, 11 (01) :57-67
[7]   DAVID: Database for annotation, visualization, and integrated discovery [J].
Dennis, G ;
Sherman, BT ;
Hosack, DA ;
Yang, J ;
Gao, W ;
Lane, HC ;
Lempicki, RA .
GENOME BIOLOGY, 2003, 4 (09)
[8]   Molecular principles of metastasis: a hallmark of cancer revisited [J].
Fares, Jawad ;
Fares, Mohamad Y. ;
Khachfe, Hussein H. ;
Salhab, Hamza A. ;
Fares, Youssef .
SIGNAL TRANSDUCTION AND TARGETED THERAPY, 2020, 5 (01)
[9]  
Gordon KSmyth, 2004, Stat. Appl. Genet. Mol. Biol., V3, DOI [10.2202/1544-6115.1027, DOI 10.2202/1544-6115.1027]
[10]   Identification of key genes and multiple molecular pathways of metastatic process in prostate cancer [J].
Guo, Lihuang ;
Lin, Mingyue ;
Cheng, Zhenbo ;
Chen, Yi ;
Huang, Yue ;
Xu, Keqian .
PEERJ, 2019, 7