Hodgkin-Huxley revisited: reparametrization and identifiability analysis of the classic action potential model with approximate Bayesian methods

被引:19
|
作者
Daly, Aidan C. [1 ]
Gavaghan, David J. [1 ]
Holmes, Chris [2 ]
Cooper, Jonathan [1 ]
机构
[1] Univ Oxford, Dept Comp Sci, Oxford, England
[2] Univ Oxford, Dept Stat, Oxford OX1 3TG, England
来源
ROYAL SOCIETY OPEN SCIENCE | 2015年 / 2卷 / 12期
基金
英国工程与自然科学研究理事会;
关键词
Hodgkin Huxley; approximate Bayesian computation; identifiability; cardiac cell modelling; functional curation; parameter fitting; ELECTROPHYSIOLOGICAL MODELS; ION CHANNELS; COMPUTATION;
D O I
10.1098/rsos.150499
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
As cardiac cell models become increasingly complex, a correspondingly complex 'genealogy' of inherited parameter values has also emerged. The result has been the loss of a direct link between model parameters and experimental data, limiting both reproducibility and the ability to re-fit to new data. We examine the ability of approximate Bayesian computation (ABC) to infer parameter distributions in the seminal action potential model of Hodgkin and Huxley, for which an immediate and documented connection to experimental results exists. The ability of ABC to produce tight posteriors around the reported values for the gating rates of sodium and potassium ion channels validates the precision of this early work, while the highly variable posteriors around certain voltage dependency parameters suggests that voltage clamp experiments alone are insufficient to constrain the full model. Despite this, Hodgkin and Huxley's estimates are shown to be competitive with those produced by ABC, and the variable behaviour of posterior parametrized models under complex voltage protocols suggests that with additional data the model could be fully constrained. This work will provide the starting point for a full identifiability analysis of commonly used cardiac models, as well as a template for informative, data-driven parametrization of newly proposed models.
引用
收藏
页数:20
相关论文
共 50 条
  • [31] KINETIC-ANALYSIS OF INCOMPLETE CURRENT TRACINGS ACCORDING TO THE HODGKIN-HUXLEY MODEL
    BONIFAZZI, C
    BELLUZZI, O
    SACCHI, O
    JOURNAL OF THEORETICAL BIOLOGY, 1988, 130 (02) : 183 - 190
  • [32] Coefficient of Variation based analysis of Coherence Resonance in Hodgkin-Huxley Neuron Model
    Han, Chunxiao
    Wang, Jiang
    Guan, Wenye
    Deng, Bin
    Dong, Feng
    PROCEEDINGS OF THE 2009 2ND INTERNATIONAL CONFERENCE ON BIOMEDICAL ENGINEERING AND INFORMATICS, VOLS 1-4, 2009, : 1685 - 1688
  • [33] AUTOMATIC COMPUTATION OF CHANGES IN MEMBRANE POTENTIAL AND UNDERLYING PROCESSES IN HODGKIN-HUXLEY NERVE MODEL
    MICHALOV, J
    ZACHAR, J
    KOSTOLANSKY, E
    PHYSIOLOGIA BOHEMOSLOVACA, 1966, 15 (04): : 307 - +
  • [34] On Multivariate Method of Qualitative Analysis of Hodgkin-Huxley Model with Decision Tree Induction
    Martsenyuk, Vasyl
    Warwas, Kornel
    Augustynek, Krzysztof
    Klos-Witkowska, Aleksandra
    Karpinskyi, Volodymyr
    Klymuk, Natalya
    Mayhruk, Zoryana
    2016 16TH INTERNATIONAL CONFERENCE ON CONTROL, AUTOMATION AND SYSTEMS (ICCAS), 2016, : 489 - 494
  • [35] Bifurcation Analysis of a Certain Hodgkin-Huxley Model Depending on Multiple Bifurcation Parameters
    Erhardt, Andre H.
    MATHEMATICS, 2018, 6 (06):
  • [36] Stochastic Sensitivity and Method of Principal Directions in Excitability Analysis of the Hodgkin-Huxley Model
    Bashkirtseva, Irina
    Ryashko, Lev
    INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS, 2019, 29 (13):
  • [37] Qualitative analysis of the hodgkin-huxley model of neuron excitability based on classification rules
    Martsenyuk, Vasyl
    Rudyak, Yurii
    Sverstiuk, Andriy
    Mayhruk, Zorana
    Horkunenko, Andriy
    Kasianchuk, Mykhailo
    CEUR Workshop Proceedings, 2019, 2516 : 165 - 176
  • [38] Predicting action potential characteristics of human auditory nerve fibres through modification of the Hodgkin-Huxley equations
    Smit, J. E.
    Hanekom, T.
    Hanekom, J. J.
    SOUTH AFRICAN JOURNAL OF SCIENCE, 2008, 104 (7-8) : 284 - 292
  • [39] Characterizing parameters and incorporating action potentials via the Hodgkin-Huxley model in a novel electric model for living cells
    Bougandoura, Omar
    Achour, Yahia
    Zaoui, Abdelhalim
    Starzynski, Jacek
    ELECTROMAGNETIC BIOLOGY AND MEDICINE, 2024, 43 (03) : 187 - 203
  • [40] Theoretical Analysis of Transcranial Magneto-Acoustical Stimulation with Hodgkin-Huxley Neuron Model
    Yuan, Yi
    Chen, Yudong
    Li, Xiaoli
    FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2016, 10